BtaINT0097384 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64890880-64891369:+
Coord C1 exon
chr13:64890880-64891036
Coord A exon
chr13:64891037-64891341
Coord C2 exon
chr13:64891342-64891369
Length
305 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
3' ss Seq
TCTCCTCCCCTTTCTTCCAGACC
3' ss Score
12.03
Exon sequences
Seq C1 exon
ACATACTCGGGCCTCTTCTGTGTCACCATCAACCCCTACAAATGGCTCCCTGTCTATACAGCCTCCGTGGTAGCAGCTTACAAGGGAAAGCGCCGCTCGGAGGCCCCGCCCCACATATACGCGGTGGCGGATAACGCCTACAATGACATGCTGCGCA
Seq A exon
GTAAGGGCTGCCTTGACTCCTCTCCCTGAGTCCTCCTTCTCTCCTGAGACCCTTCCCCCGGCTCCCGGCTCCCCTTCCCTCCACTCGCACTGCCCTCTTTTCCATCCCGCTGGACACTGAAGCATAGTCGTTCTGTGTCTTCAAGTGGGAGCTGGCCTGCAGTCTGAAGGTTCCCACCTGGTCCTTCCCATTTCTGGCTCTGGGTGGCGGAGGGGCTGTCCCAGCACCAAGGATATCCCAGGTGTTCCACCTGTGGCTGGTCCCTCACTTTGGCTAACTTCTCTGTCTCCTCCCCTTTCTTCCAG
Seq C2 exon
ACCGAGAGAACCAGTCCATGCTGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(55.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCGGGCCTCTTCTGTGTC
R:
GTGATCAGCATGGACTGGTTCT
Band lengths:
182-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development