RnoINT0096581 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151129160-151129603:+
Coord C1 exon
chr3:151129160-151129316
Coord A exon
chr3:151129317-151129575
Coord C2 exon
chr3:151129576-151129603
Length
259 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
3' ss Seq
ACTCTCTTTCCTTTCTCTAGACA
3' ss Score
10.06
Exon sequences
Seq C1 exon
ACATACTCGGGCCTCTTCTGTGTCACCATTAACCCATACAAATGGCTCCCGGTCTACACAGCTACTGTGGTGGCCGCCTACAAGGGCAAGCGCCGCTCGGAGGCCCCGCCTCATATATATGCAGTGGCAGATAATGCCTACAATGACATGCTCCGCA
Seq A exon
GTAAGAGCCACCTCCCTCACCGTCCCTCAGCTCAGGGTGGCTTCCGGTTAGGACCCTCTCCCCTTCCCTTCCCTTCAGCACTCCCTCCTTTGATACTACCCTAGCTATTCTGCCTTTTTAGTTTGGAAGTCCCACTTGGTCTCTCTCACTGGGTGTTTGGGTGGTGGCAACTATGTCTGCACCTTAGATGATCCAGGAAGCCCACCTATGGTTAGTCCCTCACCCTAGCTGACACATTTACTCTCTTTCCTTTCTCTAG
Seq C2 exon
ACAGAGAGAACCAGTCCATGCTGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATACTCGGGCCTCTTCTGT
R:
TCAGCATGGACTGGTTCTCTCT
Band lengths:
181-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]