GgaINT0010694 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2609522-2609808:-
Coord C1 exon
chr20:2609652-2609808
Coord A exon
chr20:2609550-2609651
Coord C2 exon
chr20:2609522-2609549
Length
102 bp
Sequences
Splice sites
5' ss Seq
GCAGTATGG
5' ss Score
1.15
3' ss Seq
GCTGCCTCCTTCCCTTGCAGATC
3' ss Score
12.87
Exon sequences
Seq C1 exon
ACCTATTCGGGGCTCTTCTGCGTCACCATCAACCCCTACAAATGGCTGCCGGTCTACACTGCGCCCGTGGTGGCGGCCTACAAGGGGAAGCGGCGCTCCGAGGCACCGCCACACATCTACTCCATCGCTGACAACGCCTACAACGACATGCTGCGCA
Seq A exon
GTATGGGCGGGGGCAGCGGCGGCTCAGGGGGGGGCACAGCCACCAGCAATGGTGGAGGGCTGGGGAGCAATCCGCACTGACTGCTGCCTCCTTCCCTTGCAG
Seq C2 exon
ATCGTGAGAACCAGTCCATGCTCATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTATTCGGGGCTCTTCTGC
R:
GAGCATGGACTGGTTCTCACG
Band lengths:
180-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]