HsaINT0107917 @ hg38
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:34980578-34981060:+
Coord C1 exon
chr20:34980578-34980734
Coord A exon
chr20:34980735-34981032
Coord C2 exon
chr20:34981033-34981060
Length
298 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
3' ss Seq
TCCCCTTCCCTTTCCTCCAGACC
3' ss Score
12.48
Exon sequences
Seq C1 exon
ACCTACTCAGGCCTCTTCTGTGTCACCATCAACCCCTACAAATGGCTCCCAGTCTATACGGCCTCCGTAGTGGCTGCTTACAAGGGAAAGCGCCGCTCAGATTCCCCGCCCCATATATATGCGGTGGCGGACAACGCCTACAACGACATGCTGCGCA
Seq A exon
GTAAGGGCCGCCTGGACTCCTCCCCAACCGCAGACCCCGACCTCGGTCCCGGGAGGCCTCTGTAAGGGACCCCCTTCCCCCACTGGCACTGCCCCCCTTTTGACGCTGCTGGACATGGTCGCCCAGCCGTTCTGTCCCTCCGCATGGGAGCTGACCTCCACTAGGGACAGCCCCACCTGCTCCTTCCCATTCCTGGCTCTGGGTGGTGGGGTCTGCCCCAGATGGATACCCAGGGTGTTCCACCTGTGGCTGGCCCCACACCTTGGCTGACTTCTCTATCCCCTTCCCTTTCCTCCAG
Seq C2 exon
ACCGAGACAACCAGTCCATGCTGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814:ENST00000262873:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(11.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGGCCTCTTCTGTGTCA
R:
GTGATCAGCATGGACTGGTTGT
Band lengths:
181-479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development