BtaINT0097400 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75110964-75112084:-
Coord C1 exon
chr5:75111924-75112084
Coord A exon
chr5:75111073-75111923
Coord C2 exon
chr5:75110964-75111072
Length
851 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CCATGACCCTCGCCCCACAGGGC
3' ss Score
9
Exon sequences
Seq C1 exon
ATCAAAGCCCTGGAACTCGACAGCAATCTGTACCGCATTGGGCAGAGCAAAGTCTTCTTCCGGGCTGGCGTGCTGGCTCACCTGGAGGAGGAGCGGGACCTGAAGATCACGGATGTCATCATCGGCTTCCAGGCCTGCTGCAGGGGCTACCTGGCCAGGAA
Seq A exon
GTGAGTCCCAGGACGCTCACACCTTGCTCGGGACCCCCAGCTCTCCTGTAGCAGAGGGTACTAAGGAAGCAGGGCCTGGGCACCCTCATGGCAGGAGGTGTCCCTGGGGAGACCCACATAGCTTTCCTTGCCCCCTGCTTCCTGGATTTCTGCCTGAGGTTTAAAGTGAGCAGGAGGAAAGGGTGACTGTGTTCAGATTTTCCCTCCAAGAAAACCCCTGCCTCCCACTGTTCCTCCCTGTGTCCCTCCTGTAGGGGTGACACCCAGAGCCGGCTGTCCCCAGAGGACCCTGAGCTCCGGGGAGGAGGTGCCCTTGAGTTCCGGCAGCTCCTGTGGGGTCAGGGGCTGACTTATGCAGGATAGTGGGCGGGGCAGCTTCACATTTGCCCCTTGACTCCTCTGTGTCTGGGCTCTGGGGCATCTGTTCCAGCCTGAGCTCTGAGCGTTGTGGAGAGAGCATGAGTGTGGGTGTTTGGATAGATGGACGTTTGCAGGACATCATCTGCTGACATTCTCTCCCCAAACAAAAGCCCCAAGATTGGGGGTGACACGAGGGTGGGGAGCTGCAGTCGACAGGTGGCCTTAATGACCAGTGGTTACACTTGACTCTGTAGCGACCTCACTTACCCTTTAGTGAAGGAAGGTGGTTGTGACCTCGTCCTGGTCACCTCTGCGAGGTCACCTGTAGGACTCAACGCCAAGCCTGCCTCCTTCCCCCCACATCTATTTTGAAGTGCTCCCAGCAGGGGTCGGTCCCTCCAGAAAAGCCCCCAGGAGCGAGGTTAGGACTGTGGGCAGGGAGGTTGGCCGGCCCCCGCCTGGAGGCGCTGACCATGACCCTCGCCCCACAG
Seq C2 exon
GGCCTTCGCCAAGCGGCAGCAGCAGCTGACGGCCATGAAGGTCCTGCAGAGGAACTGTGCCGCCTACCTCAAACTGCGAAACTGGCAGTGGTGGCGGCTCTTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402:ENSBTAT00000013737:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.9=37.0),PF0061222=IQ=PU(81.0=31.5)
A:
NA
C2:
PF0061222=IQ=PD(14.3=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAAGCCCTGGAACTCGAC
R:
CTTGGTGAAGAGCCGCCAC
Band lengths:
270-1121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]