HsaINT0107967 @ hg19
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin, heavy chain 9, non-muscle [Source:HGNC Symbol;Acc:7579]
Coordinates
chr22:36698614-36700201:-
Coord C1 exon
chr22:36700041-36700201
Coord A exon
chr22:36698723-36700040
Coord C2 exon
chr22:36698614-36698722
Length
1318 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CCATGTTCCTCACCACACAGAGC
3' ss Score
6.82
Exon sequences
Seq C1 exon
ATAAAAGCCCTGGAGCTCGACAGCAATCTGTACCGCATTGGCCAGAGCAAAGTCTTCTTCCGTGCCGGTGTGCTGGCCCACCTGGAGGAGGAGCGAGACCTGAAGATCACCGACGTCATCATAGGGTTCCAGGCCTGCTGCAGGGGCTACCTGGCCAGGAA
Seq A exon
GTGAGTCCCGGGAGATACTCCTGCCCCGCATGCCAGGCCTTGCCACGCCCTTCTGTTGCCAAAGGGCACTTAGCAGGCCACCCCGCTGCAGCCAGTCACATGCCTGTCAGGGAGGCCCAGGTGGCTCTTCCTACCCCTGTTCCTGGATTTCTACCTTTGAGGAGTAGAATCGGGCAGTTCTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCTGTGGTGCGTTCTCGGCTCACTGCAACCTCCACCTCCCACGTTCAAGTGATTCTCCTGCCTCAGCCTCACTTAGTAGCTGAGGTTACAGGTGCACGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCGTCATTGTTGCCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCTCCTGGCTGAATCTGGCATTTCTGATTGGGGTTTAGAGTGATGGGTGGGAAGAGGCTGACTCTGCTTGGATTTGCCTGCCTGAAGGATCCTGCTTACCAGGACTCCTTACCGTGTGACCCTTGTGGGGACAGCACCCAGAGCCTGCCTGTCCCTAAAGAACCCTGTGATTCCAGGGGAGCAGGCCATCCTCGAGTCCAGACTCATCTTTGACTCCCTGGGGAATGACGGCTCCCCTGCTGCAGGACAGCGGCTGTGGGCACTGCACACTCGTCCCCTTGTGCTCGGGGATGGGGTCCTAGCAGGAGCGCCGAGCTCTGGGAGACGAAGCTTGAGCATTTGCACAGATGGAGGCTTGTTTATCCAAAAGCCCTCCAGCTGACACCTGCAGCCCACCTTCACAGTACATCAGCTTCTGACGTTCTCCCACCAAACAAAAGCTCAGATAGGGAACAGCACGAAGGGTGGGAAGCTGAAGTCCAGAGTCACCCAGGGCCAGTCAGCTTAATCACCAAGGGTCACGCTCAGTCCCCACACTGAGTAGGATCTGTGGTTACTTCACACGTGCCTTCACCCCCATGGGCACCTCAGTGGAGGGGTAGTCTGGTGACCTAGGTCCTTCACCGACTGTAAGATTAGTGCCTCATGGAGTCACACAGCCTGTAAGTGGGAGAAACTTATCTCAACCCCAAGGCCAGACCCCTTCCCTGAATTTCTTTCTTGAGGTGCCCCAGGCAAGGGTAGACCCCCAGAAAAGCTTGAGGACAAGACCAGGACTGTTAGGTCGGGTCTGCTGTCCACTGCTCCGCGCTGACCATGTTCCTCACCACACAG
Seq C2 exon
AGCATTTGCCAAGCGGCAGCAGCAGCTTACCGCCATGAAGGTCCTCCAGCGGAACTGCGCTGCCTACCTGAAGCTGCGGAACTGGCAGTGGTGGCGGCTCTTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345-MYH9:NM_002473:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.9=37.0),PF0061222=IQ=PU(81.0=31.5)
A:
NA
C2:
PF0061222=IQ=PD(14.3=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAAAGCCCTGGAGCTCGAC
R:
CTTGGTGAAGAGCCGCCAC
Band lengths:
270-1588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)