GgaINT0105093 @ galGal3
Intron Retention
Gene
ENSGALG00000012533 | MYH9
Description
NA
Coordinates
chr1:53804191-53805165:+
Coord C1 exon
chr1:53804191-53804351
Coord A exon
chr1:53804352-53805056
Coord C2 exon
chr1:53805057-53805165
Length
705 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
GATCTCCATTTACTCTGTAGAGC
3' ss Score
6.91
Exon sequences
Seq C1 exon
ATCAAAGCATTGGAGCTGGATTCTAACCTTTACCGAATTGGACAGAGTAAAGTGTTTTTCAGAGCTGGAGTCCTTGCTCATCTTGAAGAAGAAAGAGATCTAAAAATCACAGATGTCATTATTGGCTTCCAAGCATGCTGCAGAGGCTACCTGGCCAGAAA
Seq A exon
GTAAGGATCGGGTTTTATAAAGTACATTATAAACATATGTATTTCTACTCTTCAGGTGCAAGTTTCTCTTCCAAAAAAAAAAAAAAAAAAGCTGACTACAAATTATTTTTTGTCAGAAAGACCATGATTTGTTCATCGTATATAACAGCTGATAATTGTTTTAGAGTTGTCCAGTCTGTGTAATACTTGAGTTCTAGCACATGCAAGAAAATATGTATGCTGCTGTCCTACATACAGGCCAGTAAAGCCTATTTCCCTCCATAGGAGCACTATACAGCAATACACCAGGCAGCTTTTAGGTCTGGGTTTTTTGGGTTTTTGTTTTTTTTTTGTGAAAGAGCTGCAAGCTACAAATGTGATATTTCAAAGGTCTTAGCACAGGGATTTCTCTGAAGCTGTTAGGTAGGACTGCAAATGGTACATATCTGAAAACAAGAGTAGTGTCTGTCAGGTACAAAACACCTCTGTTTCATATCTCCTCGTGGGAAGTGAGAATGAGGCTTCTAAGATAAGAAGGAAAAGCTTTTATTAATACAGAGGAAACTGAGTAAAGGAAAAGATAACCAGTCTTACCTCAGCAGAAAAAGACTTTAAAAAACTAGAGGAATTTCACTGCAAATTTTGTTCTGTTATCCGAGAGTGGTCTTGGTTGAGAGATTGGTGTCCCACTGTGGGTTCGTAATCTGATCTCCATTTACTCTGTAG
Seq C2 exon
AGCTTTTGCCAAGCGCCAGCAGCAGCTGACAGCCATGAAGGTGCTCCAGAGGAACTGTGCTGCCTACTTGAAACTGCGGAACTGGCAGTGGTGGAGGTTGTTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533:ENSGALT00000020472:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(14.7=37.0),PF0061222=IQ=PU(81.0=31.5)
A:
NA
C2:
PF0061222=IQ=PD(14.3=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATTGGAGCTGGATTCTAACC
R:
GGTGAACAACCTCCACCACTG
Band lengths:
262-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]