BtaINT0097403 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75109159-75109953:-
Coord C1 exon
chr5:75109822-75109953
Coord A exon
chr5:75109366-75109821
Coord C2 exon
chr5:75109159-75109365
Length
456 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTTCTCCCGTGTTCCCGCAGCTC
3' ss Score
12.36
Exon sequences
Seq C1 exon
GTCAAGCCGTTGCTGCAGGTGAGCCGGCAGGAGGAGGAGATGATGGCCAAGGAGGAGGAGCTGGTGAAGGTGCGGGAGAAGCAGCTGGCTGCTGAGAACAGGCTCTCAGAGATGGAGACCCTCCAGTCCCAG
Seq A exon
GTGGGTGTCTGCAGACTCTGCCCGCGTAGTGCTGCCTCCTGCTGGCCACCAGGGCTCCTGCTTAGCTGCTTCAGTTGTGTCTGACTCTCTACAACCCTACGGACTACAGCGTGCCAGGCTCCTCTGTCCATGGGATTCTCTAAAGAAGAATACTGGAGTGGGTTGCCATGCTCTGCTCCAGGGGATCTTCCCAACCCAGGGATCGAACCCGGGTTTCCTGCATTGCAGGCAGATTCTTTAAAACTGAACCACCAGGGAAGCCCCAGTAGACAAAGCATAAACTTGGCATTGAAGGGAAATTGGGGGGTAATTTCCTCGATGCAGGATGTGATGTTTATACATGCCTGGCAGCTTAAGCATCCTGAGATGGAGCCTTTGCTGGGGACCAGCTCTCCCATGGGGACAGGCAGCCCACAAGCAGCCGTCAGAGTTCACATTTCTCCCGTGTTCCCGCAG
Seq C2 exon
CTCCTGGCTGAGAAGCTGCAGCTCCAGGAGCAGCTCCAGGCGGAAACGGAACTGTGTGCCGAGGCTGAGGAGCTCCGTGCCCGTCTGACAGCCAAGAAGCAGGAGCTGGAAGAGATCTGCCATGACCTGGAGGCCAGGGTGGAGGAGGAGGAAGAGCGATGCCAACACCTGCAGGCCGAGAAGAAGAAGATGCAGCAGAACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402:ENSBTAT00000013737:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.275
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(9.5=20.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTTGCTGCAGGTGAG
R:
CTGGATGTTCTGCTGCATCTTCT
Band lengths:
334-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]