HsaINT0107970 @ hg19
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin, heavy chain 9, non-muscle [Source:HGNC Symbol;Acc:7579]
Coordinates
chr22:36696897-36697711:-
Coord C1 exon
chr22:36697580-36697711
Coord A exon
chr22:36697104-36697579
Coord C2 exon
chr22:36696897-36697103
Length
476 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTTCCACTTGTTGTTTGCAGCTC
3' ss Score
9.82
Exon sequences
Seq C1 exon
GTCAAGCCGCTGCTGCAGGTGAGCCGGCAGGAGGAGGAGATGATGGCCAAGGAGGAGGAGCTGGTGAAGGTCAGAGAGAAGCAGCTGGCTGCGGAGAACAGGCTCACGGAGATGGAGACGCTGCAGTCTCAG
Seq A exon
GTGGGTGTCAGTGCAGGCTCAGTCCAGGTCGCACGACCTGCCTGGTGCTGCCACCTGCTGGCCATCGGTAGGCACGGCATGCTGGAAGTTTCTATTACTATAGGAGTTTTCTACAACTGAGTTTCCTATTACTGTAAACAGTGACCAGTCTCTCTGCAGACCCCATTGGGTGTTAAGTGATGTAGGGAGGCCACTTAATAGAGTGGAACGTTCACAAGTGTTGGGTTCAAACCTCAGCTCTACCACATGACTTGAGCCCATTTCCTGGGACCTTGCTCTGGAGCTCATGGGGTAGTGAAAAATCAAGGACACGATGTCTGGAAGGTACCTGGAAGCTTCAGAGCTCTCCAGATGAAAGCTACTTTTGTCTGCATGTTCCTTTCCCTCTGGGATCCCGAGCCATGGCGTCCGTCCTTGAGGATGGAGTGGCTTGAGGGTGTTGCGAGGAGCTTGTGTTTTCCACTTGTTGTTTGCAG
Seq C2 exon
CTCATGGCAGAGAAATTGCAGCTGCAGGAGCAGCTCCAGGCAGAAACCGAGCTGTGTGCCGAGGCTGAGGAGCTCCGGGCCCGCCTGACCGCCAAGAAGCAGGAATTAGAAGAGATCTGCCATGACCTAGAGGCCAGGGTGGAGGAGGAGGAGGAGCGCTGCCAGCACCTGCAGGCGGAGAAGAAGAAGATGCAGCAGAACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345-MYH9:NM_002473:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.264
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCCGGCAGGAGGAG
R:
TGGATGTTCTGCTGCATCTTCT
Band lengths:
320-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)