GgaINT0105095 @ galGal3
Intron Retention
Gene
ENSGALG00000012533 | MYH9
Description
NA
Coordinates
chr1:53806160-53807141:+
Coord C1 exon
chr1:53806160-53806291
Coord A exon
chr1:53806292-53806934
Coord C2 exon
chr1:53806935-53807141
Length
643 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTGCTTTGTGTACTATGAAGCTA
3' ss Score
3.45
Exon sequences
Seq C1 exon
GTGAAGCCCCTATTGCAAGTAAGCAGACAGGAAGAAGAGATGATGGCCAAGGAAGAAGAACTAATAAAGGTTAAGGAGAAGCAGCTAGCTGCAGAAAATAGACTGAGTGAGATGGAGACTTTCCAGGCCCAG
Seq A exon
GTGAGTTGTGTGTAAAACTTATTCTGTCCACTTCCTTAAGTGCTGCTCCTTTGCTTTAGTGGTCTGATGCACAAGCTGCAGGATTCCTGCTTGCTGAAATATGTGATTTAGCTCGACCTTGTTCAGTTTTGCTTGCCCTTCTCCCCAGCTCAGTTCCTACACCAGGTCATTTAGTGTAGTGAATAACTATTGCCTTGTTACAGCCGTTATATGTGAAGTCTCTTTTGGCTGAGTATTATAGCAAGCTGGTTGAATTCAGCCTCGTCGTAAATGGAATTCTTTTTGTTTGACAACACAGAAGGTGGCAACAGGCTTGTTTTTCTGCAGGGATGGTACTTACATTACTTTTGCAGGGGAAATCTAAACAATCAATCTAAAAACAATCAATCAAAACTAAACAACTTCAAATGGTCATGGTCTCTAGAAATTTGTTTGGGCTAATGTGAATGGTTTGTGAAAGGAATCAAACACTTAAAAACTGCATTTTGACATTTAATCTTGAACTCATAGCAGGAGACAGCTGAAGTTGTTATGATATAACTGCAGAACACCGGGGTATATACCTTCAGTTAATATAAATTGCTTAGTGCTTTGGTAAATTGGAGTTTGTCTTACTGTTGTTTCTGCTTTGTGTACTATGAAG
Seq C2 exon
CTAATGGCAGAGAAGATGCAGCTGCAAGAACAGTTGCAAGCAGAAGCTGAACTCTGTGCTGAAGCTGAGGAGATAAGAGCCCGCCTGACAGCCAAGAAACAAGAACTGGAGGAAATATGCCATGACTTGGAAGCAAGGGTGGAGGAAGAAGAGGAACGGTGTCAACATCTGCAGGCTGAAAAGAAGAAAATGCAGCAGAACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533:ENSGALT00000020472:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.319
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(16.6=90.9)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCCTATTGCAAGTAAGCA
R:
CTGAATGTTCTGCTGCATTTTCT
Band lengths:
335-978
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]