BtaINT0097418 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75098346-75099456:-
Coord C1 exon
chr5:75099328-75099456
Coord A exon
chr5:75098435-75099327
Coord C2 exon
chr5:75098346-75098434
Length
893 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
GTTCTGGGTTCCCGTGGCAGGAG
3' ss Score
5.83
Exon sequences
Seq C1 exon
GCCCAGATGAAGGACTACATGCGGGAGCTGGACGACACGCGCGCCTCCCGCGAGGAGATCCTGGCGCAGTCCAAGGAGAACGAGAAGAAGCTGAAGAGCATGGAGGCCGAGATGATCCAGCTGCAGGAG
Seq A exon
GTGGGCCGGGTGCAGTGCACCCTCTGACCAGCAGGTGGCAGCCCAGAGCCTCCACTCACCAGCCTGGGTCACCTGGGAAAGCCTTGAAAAATGGGCCAAGCTCCAGGCGTGGGCAGGGCTGGTTCTTGTTTTCTGAAAGGTTGCCGTGCAAGGTTTCATTAAGTTGGAAGGCTCCCTGGTGTGATTAAATTGTGTGTGAATTAAATTGTCACCATTTGGGGCCGACTCCGTTGCACAAGACGGGGCTCTGTGGTAACCACCGCTGCCCACTGTGACTTGCCGCCTGGCGAGCAGGGGGCCCTTCCAGAGGCTTCCTGCACTGAATGTCCCCTGGCGGCCTCTTGCCTCATGCAAGGCTGGTTGTGAAAGCATTCCCCAGGCTCTAGGCCATCTTCTGCAGAGAGGATGCTGGCAACCGAGTTCTGCTCCTGACTGGGCCAGGTAGCCAGGTTTCCTGTCAAGACTGGCTGTGCCCTCTTGAGCTTGTGGGTTTCTGATGAGGCCACCTCAGCCTCAGGTGCAGAGGCCACCTCTGCCCTTCTGGCTTTCAGAGCCCCGGCACCCTGGCCTTAACTCATATCTCTATCCTGTCGCCCCTGCTTCCTGTCTCGTTGGAAAGCAGAGGGACCAGCATTCCATCAGGCCAGGGTGATTTCTTATTTATTACAACACCCCTGGCTTAGTTTTTAGCACTTAGGTGTGGGGGCTATGTAAACATATGGTGCCTAAGCTGTGACCTCAGAGGGGCTCATGAAAATGGGCTTCATGGAGGAAGCAGGCCTGGGAAAGGGGTTTCAAAAGAGGAGGCCAGGGGCTCAGAGTACTGGGAATGGAGAGTGGAGGCTGTCGGCTATGGGGACCCCCATGGGTCACGTTCTGGGTTCCCGTGGCAG
Seq C2 exon
GAGCTGGCAGCCGCCGAGCGTGCCAAGCGCCAGGCCCAGCAGGAACGGGACGAGCTGGCCGACGAGATAGCCAACAGCAGCGGCAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402:ENSBTAT00000013737:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGATGAAGGACTACATGC
R:
TGCCGCTGCTGTTGGCTAT
Band lengths:
214-1107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]