DreINT0099747 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7491017-7491321:+
Coord C1 exon
chr6:7491017-7491145
Coord A exon
chr6:7491146-7491232
Coord C2 exon
chr6:7491233-7491321
Length
87 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
TTCTGTTTCTGTGTTTTTAGGAT
3' ss Score
11.19
Exon sequences
Seq C1 exon
GCTCAGATGAAGGACTACCAGAGGGAGCTGGAGGAGGCACGCACTTCACGAGACGAGATCTTCACTCAGTCTAAAGAGAACGAGAAGAAGCTCAAGAGTCTTGAGGCTGAGATTCTGCAGTTGCAAGAG
Seq A exon
GTAAACTGACACTTCTGAAGAGAACTGATGGTGTTAATTGAGATTAGTTTGTCTTGCAAATTCATGGTTCTGTTTCTGTGTTTTTAG
Seq C2 exon
GATCTGGCATCTTCAGAGAGAGCCAGACGCCACGCTGAGCAGGAAAGAGATGAACTTGCTGATGAGATCTCCAACAGCGCCTCTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.628 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACTTCACGAGACGAGATC
R:
GGCGCTGTTGGAGATCTCATC
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]