RnoINT0096330 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55399219-55400700:+
Coord C1 exon
chr10:55399219-55399347
Coord A exon
chr10:55399348-55400611
Coord C2 exon
chr10:55400612-55400700
Length
1264 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCT
5' ss Score
7.27
3' ss Seq
CCCCGTTTAAACTCATTTAGGAG
3' ss Score
6.3
Exon sequences
Seq C1 exon
GCACAGATGAAGGATTACCAGCGTGAACTAGAAGAAGCTCGAGCATCTAGAGATGAGATTTTTGCTCAATCCAAAGAAAGTGAAAAGAAACTGAAGAGTCTAGAAGCAGAAATCCTCCAGTTGCAAGAG
Seq A exon
GTATCTTTGCTTGGTCACCCACGTGTTCAGCAGCTGCTTGTCCTTAGGGAATGTGTTGTGGCCTTGATGGTGTGGGTTTCAGTTCAGCACCACTTCCAGTGCTTTGTCACCTGCTCCTGAATGAATATTCTTTTACCTGACTAAAGGCAGAACAGCTGTTAGTAAGACAGCCTTCTAGAATGTGCTCTCCTGAGAGAAAGGAGAGATCATTATTTAAGCAGTAAGCTGAGTGGGCTCTGCCCAGGGAAGGTTGTTGTTTCTCGCAGAAGTGCTGTCCCCTTACAGAAAGAGACGTGTTCTGCTGAATTCTGAAGTGGGACATGTAAAAACAAGCACTTTTCACTCGTCTCTCACTAAGGTCTCCATCGTAAGGAGCAGGCAGGACAGAATTCCACCCATGTAATAAGGCCTCCTGAAGTGCACTTCTCTCTACTAATTTCTGAGATCTTCTCAAAAGATAGTGACCGGAACTGTTGGCTTGATAACAGTTGCCATGGGAAATCACCAGCACTGGCTACAGCAGCTGCCGAGACCCTGTCAGTCAGGGAGAGGCTGAGAAACAACAACTGGATGAGACACGGGCAGAGCCCAGGCTTATCCTGAGCACCGGGTCTTTGGTCCTTTCATGTTTTCTATTTTACTGTCTTTTGTTTACTTCCTTTGGGCTATTTTTCTCTTTCTGTGAGGTGTGTATGTGCGTGTGTCCGGGAGTGAAACCAGGGCCTCAGGCACGCTAACACACACTGCAGCTCAGGGCTATGACTCCTGCATTCACAGAGACATAAACATCCCTCTAAGGTTCTTCTACTTCGTCTCGCAAATTTTGATGCAGGGCAAGTTCACTGTCACAATTCGGTATTTTCCTAATTTCTATAAATGGCTTCTTTAATTCACACTAATTTAAAGCTGTGGCTTAGACTCCAAACGTACCATCTACTTCCTGGCTGCTTTGTACTTCAGCAAACCATGGCCGGTAGCTCCAAGGCCTTGAGTGAGCTGTGATTTGGTATGGCCAGTGTCTCTGTAGGGTTCAAAGTTGAATCTTGTGCTCCATGATTGTAAGGAACACCTGACGATGGTGGGAAATAGCTACTCCACACAAGTGACAGTGAACGCTTCCTTGGTGGCCTTTAATGGGTCTGGTAGCAAGTCTCACCTCAGCACTAAGCCAGCCTCCTATCTTATAGAGACTGCTCTTTGGTTATGTGGAAAGCATGAGGGAAAATGTCAGTGGGAGAGCCTAACCCCGTTTAAACTCATTTAG
Seq C2 exon
GAGCTGGCCTCATCTGAGCGAGCCCGCAGACACGCAGAGCAGGAGCGAGATGAGCTGGCTGACGAGATTGCCAACAGCGCCTCTGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.900
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGATGAAGGATTACCAGC
R:
CAGAGGCGCTGTTGGCAATC
Band lengths:
214-1478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]