BtaINT0097106 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021151 | MYH10
Description
Bos taurus myosin, heavy chain 10, non-muscle (MYH10), mRNA. [Source:RefSeq mRNA;Acc:NM_174834]
Coordinates
chr19:28686284-28686845:-
Coord C1 exon
chr19:28686717-28686845
Coord A exon
chr19:28686373-28686716
Coord C2 exon
chr19:28686284-28686372
Length
344 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
GACAATCTGAACTCACTCAGGAA
3' ss Score
3.32
Exon sequences
Seq C1 exon
GCTCAGATGAAGGACTACCAGCGTGAATTAGAAGAAGCTCGTGCATCCCGGGATGAGATTTTTGCTCAATCCAAAGAGAGTGAGAAGAAACTGAAAAGCCTGGAAGCAGAAATCCTTCAGTTGCAGGAG
Seq A exon
GTTTGTGTTTATTCATTTATTTGCTTAACAAATATTTGCCCTTGGAATTTCTCTAAGACCAGATAAATACATTTCAGTGTTTCTGTAGCCAGTGTAATCTCACTGACCATTTTTTAATATGGTGCTGGACCATCTTACTGCTTCACTTGGGCAAAGTGGTCCCATTTGATATTGTTCTACCTGACTAAACAGAGAGGTTGAATAGTGTATTTCTTAAATCTGTTTACAGTTTGAGGCACACTTGGTGCCTCAAGCAAGGTGGCAGCAGCCTACAGGCACTGTCAGACCTCACATTTAAGGAAACTTAGCAGCCAGAGCTTACATGACAATCTGAACTCACTCAG
Seq C2 exon
GAACTTGCCTCATCCGAGCGAGCCCGCCGACATGCTGAGCAGGAGAGAGACGAGCTGGCGGACGAGATTGCCAATAGCGCCTCCGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021151:ENSBTAT00000028188:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.900
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGATGAAGGACTACCAGC
R:
CGGAGGCGCTATTGGCAATC
Band lengths:
214-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development