MmuINT0103241 @ mm10
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68808793-68810248:+
Coord C1 exon
chr11:68808793-68808921
Coord A exon
chr11:68808922-68810159
Coord C2 exon
chr11:68810160-68810248
Length
1238 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCT
5' ss Score
7.27
3' ss Seq
CTCAGTTTAAACTCATTCAGGAG
3' ss Score
3.76
Exon sequences
Seq C1 exon
GCACAGATGAAGGATTACCAGCGTGAACTAGAAGAGGCTCGAGCATCTAGAGATGAGATTTTTGCTCAATCCAAAGAAAGTGAAAAGAAACTGAAGAGTCTAGAAGCAGAAATTCTTCAGCTGCAAGAG
Seq A exon
GTATCTTTGCTTTGTCCTTAGAGTCGCTCTGAGACTACAGGAAATGTGTTTTATGGCCTTGATGGTGTGATTTCAGTTCAGCACCCCTGCTAGCGAGCGAGCGCTCTGTTGCTTGCTTGTGCATATTCTTTTACCTGGCTAACGGCACAACAGCTCATTAGTAAGACAGCCTTCTAGAATGCTCCCCTGAGGGAAAGGGGTGGGATGGGTGAGGCCTGCCCAGGGAGGGATGTTGTCTCACACAGGAGTGCTGTCCCCTTACAGAAAGAGCGGCAGGTTCCGTTGAATTCTGGAGCGGAACATCTTAAAACAAGCACTTTTCACTCATCCTTTACGAAGGTCTCCATCATACGTAGCAGGCAGGACAGAATCCTACCCAAGTAATAAGGCACCTAGAGTGCATTTCTCTCTATACATTTTCCAGATTTTCTCAAAAGATAATGACCTGAAATGTTGGCTGGACAACAGTTGCCATGAGAACTCACCAGCACAGGCTACAGCCGCTGCTGAGACCCTGTCAGTCCGGGAGAGGCTGAGAAATGAAAACTGGACCAGACATGGAGCCGAGCCCAGGCTTAGCCTGAGTGCCAGCTTTTAGTCCTTTCATATTTTCTATTTTATTGTGTTTTATTTATTTCCTGTGGGATATTTTTCTCCTTCTGTGAGGTGTGTATGCATGTGCGTCAGGGAGTGAAACCGGGGCCTCGAGCACGCTCACACATGCCCCAGCACGGTTGATGGCTCCTGTCTCCATACACTCTGAGACACAGATTCCCTCTAAGGTTCTTTTTCTTCATCCCACAAACTTTGACACAGGGCAATTTTGCTGTCGCAATGCTGTATTTTTCTTATTTCTATGAATGGCTTCTTTGATCCACAACTAATTTAAAAGTGTGGTTAGACTTCCAAACAGACTCCATTTGCTTTTTGGTTGCTCTGTACTTCAGCATACCATGGTCAGCAGCTGCAAGGCCTTGAACGAGCTGTGATCTGGTGTGGCCAGTGTCTCTGTAGGGTTCAGAGTTGAATCTTGTGCTCGATGACTGTAGGGAACATGCAAGGATGGTGGGATACAGCCACTGCACACCAGTGACAGTGAAGCGCTTCCTTGGTGGCCTTTGTTTACTGGGCCTGTAGCACATCTGGCCTCCTTCCTTATAGAGACTGCTGCTTGGTTGTGTGGAAAGCATGAGGGGACTGACCATGGCCAGAGCCTAACTCAGTTTAAACTCATTCAG
Seq C2 exon
GAGCTGGCCTCATCCGAGCGAGCCCGCCGACACGCAGAGCAGGAGCGAGACGAGCTGGCTGATGAGATCGCCAACAGCGCCTCTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900:ENSMUST00000102611:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.900
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGAAGGATTACCAGCGTG
R:
TTTCCAGAGGCGCTGTTGG
Band lengths:
216-1454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types