GgaINT0127266 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1692983-1694046:-
Coord C1 exon
chr18:1693918-1694046
Coord A exon
chr18:1693072-1693917
Coord C2 exon
chr18:1692983-1693071
Length
846 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTTTTCTGAAACCTTTGCAGGAG
3' ss Score
8.52
Exon sequences
Seq C1 exon
GCTCAAATGAAGGACTACCAGCGGGAGCTGGAAGAAGCCCGTGCATCCAGAGATGAGATCTTTGCACAGTCCAAAGAGAGTGAAAAGAAACTCAAAGGTCTCGAAGCAGAAATACTTCAGCTCCAGGAG
Seq A exon
GTGAGAGTGAACTTCACAACGCTTACTTTCCTTGCTAGTGTAAGGAGAAGGTTGGGCGGTGGGAGTGAAAATCTGTCCTACTGTGTTGAACAGTAGTGGGAGCCAGGAGAGCTTTCTCTTTCCACCCCATCACCCTGCTTCCTTCAGCAGCTCTCTGAAGCTTGGGCTTCAATGGAATCATTCCAGCAGAATCCTTTACTTCTCTGCCTGAGCTGTGTGACAGTTTAAACAGATTTGAGGCCTCACTGAACTTGCAGGGAGGTTCAGGAGTCTCTGAGAGGTGTGGTGGTGCAGGAATCCCAGCATCCCACCTCAGTGGACCACTGAAGTTTGCTGACTTCCTGCCACGCAATACAGTTTGTGATGTGAAATTCAGTGCTGTTTATACTACTGTGCTAAAGCCTCTTAGTCTGTTTTCTTTTCTTGCATCGATGCTGTGTATTCTGGAGGTATAAGAAGCTAAGCTTGCTTAACATAGTGCCTGTTGTACATTGGGCATGTAGCACACTGTGATCAGTCCAACAAGGTCATTTTTTTCTTACTGCCTAGAGCTTCAGTGTTTCTGTTCTTTGTGTGTTTTAGAGGTTGTGGATGCCCCATCCCTGCAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGGTGGTTGGTGACCCTGCACATAGCAGGGGGTTGAAACGAGATGAGCCTTGTGGTCCTTTTCAACCCAGGCCATTCTATGATTCTGTGATTTCAGGGATATTACACTTCAAAGCATCTCCCAGAAGTTACTCCAAGGGCGAATTGTTTGCAGGACTTCTGAGATTCATAACACATCTTTTCTGAAACCTTTGCAG
Seq C2 exon
GAGTTTGCTGCATCTGAGCGAGCCCGTCGTCACGCTGAGCAAGAAAGGGACGAGCTGGCTGATGAGATTGCAAACAGTGCTTCAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=NA C2=0.867
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAATGAAGGACTACCAGCGG
R:
CACTGTTTGCAATCTCATCAGCC
Band lengths:
206-1052
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]