MmuINT0103712 @ mm10
Intron Retention
Gene
ENSMUSG00000022443 | Myh9
Description
myosin, heavy polypeptide 9, non-muscle [Source:MGI Symbol;Acc:MGI:107717]
Coordinates
chr15:77764505-77765828:-
Coord C1 exon
chr15:77765700-77765828
Coord A exon
chr15:77764594-77765699
Coord C2 exon
chr15:77764505-77764593
Length
1106 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
TTTTGGCGTCCATGTGACAGGAA
3' ss Score
4.98
Exon sequences
Seq C1 exon
GCCCAGATGAAGGACTGCATGCGGGAGCTGGACGACACGCGCGCCTCCCGGGAGGAGATCCTGGCGCAGGCCAAGGAGAATGAGAAGAAGCTGAAGAGCATGGAGGCCGAGATGATTCAGCTGCAGGAG
Seq A exon
GTGGGCCAGCTGTGGGCTCAGGGCAGCAGCTGCAGGAGGTGGGCCAGTTGTGGGCTCAGGGCAGCAGCTGTAGGAGGTGGGCCAGCTGTGGGCTCAGGAGTAGGAGTCAGCAGGGAGGAATGGCAGAAAGAAACTGAGCAGCCTCCTAAAGGGAGTTAACGGGGTCCCTCTAGAGCTTTATCCTTCAGCTGCACACCTTGCCAAGGTGTGGTGTGTATGTTCATGTATGTGCATGTCTGTAATAGGGAAGAGGGTGAGATGCAGCCCCCAACATGGCAACAGACCCTGCCTGTTAAATGAATATGTGACCCTTGAGTCCACAGTTCATTTCATGAACCAACGCTGTGTTGATTATGAGTTTATCAATTACACAGGGCAACGAGGGGCCTGAGTGCCCCTGGGCTGCTGTTTTAGTTACACATAAGGCACGTAGTGGGAAGAGGTGGGGTGGTGTTTCCAAGTCTGGTGGACTTCCCACAAAGGGCCATCCATCACTGGTTTATGAAGTGCTCAGTTGGACCCTCTGCTCTAGCATGGCTCCTCTCTTCTGCTGGGTCTGGGGTGATCACCTCCATTATCACCATTGTGTATAGTGATCTGAAGGCTTCCACAGCCCATCTGCAGCCCCCATTATCTGGTAGGACTGGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCATCCTGGTCAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCATGTCTCGGAAAAAGAAAAAAAAAAAAAAAATCTGGTAGGACCATATGCAGAGAGACCAGCATTGCAGCTCTGTCCACAGTCCTCCCTGTTAGGCCTGGGTGTTTCCTGTTTATAGCCCTGGCTCCTGGCTTAACTCCAGGTTCTTAGACATAGGGGCTTTATAAACACATGCCTAAACTATGCCCCCAGGGTGGACTTAACCCTAGGAGCTAGAGGGGTTCCTGGGAAAGGGCTTTATGGAGGAATGTGCTAAGGACACAGAGAGGATGTGTGGGCTGCTGGCAGTGAAGACTGTGTTGGTCCCAGTGGGTCATGTTTTGGCGTCCATGTGACAG
Seq C2 exon
GAACTGGCAGCTGCTGAGCGTGCTAAGCGTCAGGCCCAACAGGAACGGGACGAGCTGGCTGATGAGATCGCCAACAGCAGTGGCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022443:ENSMUST00000016771:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGATGAAGGACTGCATGC
R:
CTTTGCCACTGCTGTTGGC
Band lengths:
216-1322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types