DreINT0099979 @ danRer10
Intron Retention
Gene
ENSDARG00000063295 | myh9a
Description
myosin, heavy chain 9a, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-5870]
Coordinates
chr6:7585301-7585754:-
Coord C1 exon
chr6:7585626-7585754
Coord A exon
chr6:7585390-7585625
Coord C2 exon
chr6:7585301-7585389
Length
236 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
TTGCTTTTCTATCTCTGTAGGAT
3' ss Score
11.88
Exon sequences
Seq C1 exon
GCTCAGATGAAAGAACAGATGAGAGAGTTTGAGGATCTCCGTCTGTCCAGAGATGAGTCTCTTAACCAGGCCAAAGAAAACGAGCGCAAGATCAAGAGCATGGAAGCCGAGATCATGCAACTACATGAG
Seq A exon
GTTTGTCTTGCATTTTTTTAAGGATGTATCTGAATTGCACTGCAGCTTAAACTTTAAGTACTTTAGGGTCAATTCAATTTTAAGGATGTCAGTGTCCTGTTTTTTCTCCTGGAAGGTCATCCTTCACAGTTTAGCTTCAGAATCCATCAGAAACTGATTTAAGCACTCCTTGTTTAAAGGGAGTTTTTCAGGAAAACTCAGTCATGTGTAAAATGTTTGCTTTTCTATCTCTGTAG
Seq C2 exon
GATCTGGCTGCTGCTGACAGAGCAAAGAGACAAATCCAGCAAGAGCGAGATGAGTTACAGGATGAGATCAATAGCCAGAATGCCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063295:ENSDART00000149823:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100),PF127182=Tropomyosin_1=PU(23.1=79.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.4=100),PF127182=Tropomyosin_1=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGATGAAAGAACAGATGAGAGA
R:
TGGCATTCTGGCTATTGATCTCA
Band lengths:
214-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]