BtaINT0097422 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75130766-75131882:-
Coord C1 exon
chr5:75131855-75131882
Coord A exon
chr5:75130860-75131854
Coord C2 exon
chr5:75130766-75130859
Length
995 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TACTCTGGCTCTCCTGGCAGGGG
3' ss Score
8.85
Exon sequences
Seq C1 exon
ACCGAGAGGACCAGTCCATTTTGTGCAC
Seq A exon
GTAAGTGTTTCTGTCTGGGTGGCGGGGCCTTGGTCACTCTGTTCTGTTCTTACTCTTCGGGACTCCTACCAAAACCTAGGTCCATGAAATCCATTCCCAAGTCAATCCCCTACCCCTTCCCCAAAAAGTGAAAAGTGAAAATGTGAGTTGCTCAGTTACGTCTCTTTGTGACCCCATGGACTGTAGCCCGCCAGGCTCCTCTGTCCATGGAATTCTCCAAGCAAGCATACTGGACTAGGTTGCCATTCCCTTCTCCAGGGGATCTTCCTGACCCAGGGATTGAACCCGGGTCTTCTGCATTGCAGGCAGATTCTTTACTGTCTGAGTCACCAGGGAAGCCCCCACTTCCCCAAGGAACAGGCTTAATGTTTGCTACTCAGTGGTCCCACAGTAGAATGAGCTTTATTTCATGGCCAAAGATTTAATCTCCTTCCTCAAAGGAGGGGGTGGGGCTGGGGTTTATAGCCAAGAAGAAAAGCAAGCATTTTCTCAACAAGGCAGGGTTGGGAGCTGATGGCCCCCAGAATGCATTCTCCTGCTTTGAACCTCAGCTTTCTTTACCTGGGCTTCTCACCTCCGTCCTCTGAACCTAACGAGGAGCTGATAAATCAACCCACTGCTGAGGAAGTTAATGGTACAGAACATTCCTTCAAGTGAAGTTTCAAGGAAAGATGTATAAGTGCCTTTGACCCCTGAGTCAACAGCTGCTGAAAACTGATTCCTGAGACTTTTGGAAGCAAAGGCTGCCAAGTGACCAGGGCTGGCAGTGGACCGAAGTTTACTCTTGTCAGGCCTCTGGAGGGCCATGGGAAAGGACCCCAGTGAGGATTCCAGAGTCAGCCTGTCCCTTTCCTGCCACGGGCTCTTGCGGGGGTAGAGGGGTGTCCCGCATTGGCACCCACAGAATGGGAGACAGTAGAGCCTGCAGTGGGAAAGGGGAGACACCAAAGATTTGGCCACTTCTCCCCTGAGAACTACTCTGGCTCTCCTGGCAG
Seq C2 exon
GGGTGAGTCTGGAGCTGGCAAGACGGAGAACACCAAGAAAGTCATTCAGTACCTGGCTCACGTGGCCTCATCACACAAGAGCAAGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402:ENSBTAT00000013737:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]