GgaINT1018588 @ galGal4
Intron Retention
Gene
ENSGALG00000012533 | MYH9
Description
myosin-9 [Source:RefSeq peptide;Acc:NP_990808]
Coordinates
chr1:51628342-51629226:+
Coord C1 exon
chr1:51628342-51628369
Coord A exon
chr1:51628370-51629132
Coord C2 exon
chr1:51629133-51629226
Length
763 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
ATTGCAGACTTTCTTTACAGAGG
3' ss Score
4.83
Exon sequences
Seq C1 exon
ACCGAGAGGATCAGTCCATCCTTTGCAC
Seq A exon
GTGAGTATATACAGTTGCAAGCTTGGTGGGATGTCTGTGTTAAAAATCTTGCTTGGAGGACTCTTTCAATAGTTAGCACTTGGGGGTGGGCTCAAGTAAATTGAGTAATATTGGAGGGTTAAGGAAGGTCCTACTTCAGTTCCTCCAAGATTTAATCCTTTCTGCAGAATAATGTTCATGGGAACTGAAGGAAGAAAGGAGATTTTCAGTCAGTCCAAACTCCTGAAGAAATAAGGTTTTGTCAATGGAGAGTCCAAAGCCTTGGAGAACTCCTTAAGATTTGGTGCAACTGTTGTGATTAACAACATCAGTGCTGATGAGCCTGATGTAGTAACAAATAGATAGTCTTACTTATTACAGCAGTTTCTCTTCTTGACAAAACAAAATTGGTTGGCCCTCGTCAGAGACCTTCACTCTGAAAGATTCATTTCTTTACCTTTCACTGCTACCTCTATAGCTGCCTCTGGATTATTTCTCATCCACGTAGCAGTTTTTGTATCTTAAGTGACTAAAAAGTATAGTTCTTGTTTGTATTGCCTCCTTTGTGTCAGCACACAGAATCCATGCCCAGTGGCAAACTAGCTGAGGGCTGTAGCCTTCCATCCAGCTACACTTATGCCACTCTCTGGTATAATTTTGTTGGCTTTGAGAGAGATGTTGTGACAGGGTGGATTTAAGGAGCTCTGTAGCCCTTTGGAGTTAGAAATGTGTCCCCCTGTCTTTTTTTGTGTGTGTGTGAATGAATTGCAGACTTTCTTTACAG
Seq C2 exon
AGGCGAATCAGGAGCTGGTAAGACGGAGAACACCAAGAAGGTCATTCAGTATCTGGCTCACGTTGCTTCCTCACACAAGTCTAAAAAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533:ENSGALT00000020472:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.148
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(24.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]