HsaINT0107990 @ hg38
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:7579]
Coordinates
chr22:36326568-36327488:-
Coord C1 exon
chr22:36327461-36327488
Coord A exon
chr22:36326662-36327460
Coord C2 exon
chr22:36326568-36326661
Length
799 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TTCCTTGCCTCTCTTGGTAGTGG
3' ss Score
6.86
Exon sequences
Seq C1 exon
ACCGAGAAGATCAATCCATCTTGTGCAC
Seq A exon
GTAAGTATTTCTCCGTCTGGGTAGTGGTTCGTTTCACCCCAGTCTGTTCTCATTCTTGAGGTCTCCTACTGAAACCACAACTGGGGCTTGCAGAGTCCCCCATTCCCAATTCAAGGCCCCTCCTCCACTTCTCCAAGGGATAGGACTTCAGTTTGTGTGTTTGCTACTCAGTGGTCCCACTGCATGGATGAGCTCAATTTCAATCATCCTTCCTCAAGGAGCCAGTGGGAAGGAGGGTGGAGCTTATGGCAGAAAGGAAAAGCAAGATCTCTCCACAATCCAGCTGGGAACCAGCTCCTCCGTAACTTCTGGGTGGAAGGCATTCCTTCTTGCTCTGGATGGTGGCTTTTCTTTACCTGAATTGAAGTAGACACTGGGGCCTCTCAGCCTCTGAACTTAACAAGGAGATCCATAAACCCCATTGCCAAGAGAGTTAATGGCACAGAACATTCCTTTAAGTGACGTTTCAAAGGAACATGTACAAGTGCCTTTGACCCCTAAGTCCACAGCTGCCTAAAACTGATTTTTAAAACACTTGGATGTGAAGTCACTTGCCCTGACAAGTGACCAGGACAGGCAGTGGATTTCAGTTTACTTCTGTCTGGCCCCTGGAGAGCCATGGGAAGTGAACTGCCTGAGGATTCCAGAGCGTTTATGTGGCAGTCCCGTTTTCTGCCACACGTTGGGTCCTTCACGGGCACCCAACAGAATGCGAGGCAGTGGAGCGTGCAGTGGGAAGGGACAGAGGTCAAGGACTTGGCCATGCCTAAGCCCGGGACTTCCTTGCCTCTCTTGGTAG
Seq C2 exon
TGGTGAATCTGGAGCTGGCAAGACGGAGAACACCAAGAAGGTCATCCAGTATCTGGCGTACGTGGCGTCCTCGCACAAGAGCAAGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345:ENST00000216181:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.131
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development