BtaINT0097447 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30237496-30237811:-
Coord C1 exon
chr19:30237666-30237811
Coord A exon
chr19:30237587-30237665
Coord C2 exon
chr19:30237496-30237586
Length
79 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGC
5' ss Score
5.01
3' ss Seq
TTCTGCATTTCCCTTCACAGGAA
3' ss Score
11.18
Exon sequences
Seq C1 exon
CTGGAAAGCTCCCTGGAACAAGAAAAGAAGCTCCGTGTAGACCTGGAAAGGAACAAAAGGAAGCTGGAGGGAGACCTGAAGCTCGCCCAGGAGTCCATCCTGGATCTGGAGAACGACAAGCAGCAGCTGGATGAGCGGCTCAAGAA
Seq A exon
GTGAGCCCTGACACCGCTGTGCTCGGGTTTCCAGTGCCTGGGTGTCTGGTCCTCACATGTTCTGCATTTCCCTTCACAG
Seq C2 exon
GAAAGATTTTGAGTACTGTCAACTGCAAAGCAAAGTGGAAGATGAGCAGACTCTGGGCCTGCAGTTTCAGAAGAAAATCAAAGAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803:ENSBTAT00000001120:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(25.6=69.4),PF0003816=Filament=FE(17.6=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0003816=Filament=FE(10.8=100),PF0157614=Myosin_tail_1=FE(6.0=100),PF131661=AAA_13=PU(5.5=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCGTGTAGACCTGGAAA
R:
GCCCAGAGTCTGCTCATCTTC
Band lengths:
176-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development