GgaINT0127426 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:598771-599098:-
Coord C1 exon
chr18:598953-599098
Coord A exon
chr18:598866-598952
Coord C2 exon
chr18:598771-598865
Length
87 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
ACCATTTGCTTTGTGCAAAGGAA
3' ss Score
5.49
Exon sequences
Seq C1 exon
CTGGAAGGGTCCCTGGAGCAAGAGAAGAAGCTGCGCATGGACCTCGAGAGAGCCAAGAGGAAACTTGAAGGAGACCTGAAGTTGGCCCATGATAGCATAATGGACTTGGAAAATGATAAACAGCAGCTGGATGAGAAACTGAAGAA
Seq A exon
GTAAGTGTGGTTGTGGGACATCTGAGTGCTGGACGGGTACACTTAGATGTTTTGTTCAGGCACTAACACCATTTGCTTTGTGCAAAG
Seq C2 exon
GAAAGACTTTGAAATCAGCCAGATCCAGAGCAAAATTGAGGATGAACAACTTCTGGGCATGCAGTTACAGAAGAAGATCAAGGAGCTGCAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0157614=Myosin_tail_1=PD(24.1=65.3),PF0003816=Filament=FE(16.8=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0003816=Filament=FE(11.1=100),PF0157614=Myosin_tail_1=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCTGAAGTTGGCCCATG
R:
GCCTGCAGCTCCTTGATCTTC
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]