BtaINT0097859 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13168121-13168947:-
Coord C1 exon
chr19:13168874-13168947
Coord A exon
chr19:13168243-13168873
Coord C2 exon
chr19:13168121-13168242
Length
631 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
GGGTTCCCCTGGCCCCCCAGGCC
3' ss Score
7.77
Exon sequences
Seq C1 exon
GCTGTTTGACTGGCTGGTCTCGGTGATCAACAGCAGCATCTGTGCCGCCCCCGACTCCTGGACCACTTTCATAG
Seq A exon
GTAGGTCGGGGGTCCACGGACAGAGAGCAGAGCCTGGGTCTCCTGGGGGCTTCCGGGCAATTCTGCACCTATCCCCTGCTGCTCCACCAGTGTGGGCCAATGTCGCTTTCTCCAGTGCCCGTGTCTCAGCATCCCTAGCTCTCCAGGCAGGCTCAGCTGGTGCCCGGGCCACGAGGGCCCCTTCACCCCCTGGAGACCCAGATCCAGTCTCAGATTAGTGAGGAGCAGCGAACGGGCTCAAAGGGCCTTAGGGGGGATTTGAGAACATCTTTGGAACCTGGATGGGACAGTCAGGTAGGGGAACCTGGGTGGGACAGTCAGGTAGGGAAGGAAGCAAAGCTCAGAGGCATCAGTAACGTTGGCTCACAAAACAGCGAGCACCCACTGAGCAGCCACGACCCAGGCCATCCAGACTGGGTGGGACACGGGGTCCCTGGGGCCTGGTTCCCTCACCCCTTCGGCCTCTTCCCGCTGAGTTCTGAGGGGCAGGAGGCGGTGATGGGAACCGCCTCTCTCCTTGGGGTGGGGTAGAGTACCCACTCGGTTTCGTCTTCAGGCTGCCAAGGGTGAGGCTTCACCCCAGGCCCCTGTAGCCCCACAGTAGCCCCCACGGGTTCCCCTGGCCCCCCAG
Seq C2 exon
GCCTGCTGGACGTGTACGGGTTTGAGTCGTTCCCCAACAACAGCCTGGAGCAGCTCTGCATCAACTACGCCAACGAGAAGCTGCAGCAGCACTTCGTGGCTCACTACCTCCGGGCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTTGACTGGCTGGTCTCG
R:
CGGAGGTAGTGAGCCACGAAG
Band lengths:
185-816
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]