MmuINT0104087 @ mm9
Intron Retention
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84712879-84713819:+
Coord C1 exon
chr11:84712879-84712952
Coord A exon
chr11:84712953-84713697
Coord C2 exon
chr11:84713698-84713819
Length
745 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGCA
5' ss Score
2.58
3' ss Seq
GTTCTCTCCTCTCTTCCCAGGGC
3' ss Score
11.27
Exon sequences
Seq C1 exon
GCTGTTCGACTGGCTGGTGTCTGTGATCAACAGCAGCATCTGTGCAGACTCCAAATCATGGACTGCCTTCATAG
Seq A exon
GTAGCAGGGAACCCTCCAGAAAATAAGCCATTGGACCCAGGGTGGAGGAAGGGTCCCTGGGTCATGTGGGTGCCTGGGAGCAGCTCCTTCCCTCTCTCTGCTAGTGTCCCCATCCACCCACCCACCCATCCATCCAGGAGTTTGGTGATATTTCTACGTTTGATTGCCCACATATATGTCCATCCATGGCTCTCTAGACAGACCAGTTTACGCCTTATTCCTCATGGTCCTTTTTCTCCTAGTCCCAGGAAAGGTAGTCAGAGGCACATTTGAGGGCAGCATTGTTGTGCGTTGGGTTGGGTGAGTCAAATAGGGAATTAATTAAAATTAAAGCCTAGTGATGCCAACACAGTTCGCTTAAAAAGGGGCATCAGCTGGGCTGGTGAGATAAGGTCCTCTGAACAAGGTCGATACAGAGGACATTCCCTGTATCACACAAAAAACAGGACCCAGTAGCCTCAAGGGGGAACCTGTTGGGACCAGAGGATTTCAGACTTGAAGGTGGGCTGATGCCTGAGCTGCCCTTCATTCAGATGTGTGACTTTCTGCTTGCTCTGATGTAGTATGAAGCAAGGGAAGAGGTCCTGGGACCTACATAGGTGGGTTGTGGGAGCAGGAGACTGCCATCACTCAACCTCATCCCAGGGCTGATTGAGGCCTCTGCAAGGGTGCAGCCACTTGGGCTGCCGTGCTTGTCATCTCTACCACCGTGTGGTAGCCCCATGGTTCTCTCCTCTCTTCCCAG
Seq C2 exon
GGCTGCTAGATGTGTATGGGTTTGAGTCATTTCCTAATAACAGTTTGGAACAGCTGTGCATCAACTATGCCAATGAGAAGCTACAGCAGCACTTCGTGGCTCACTACCTCAGGGCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-Myo19:NM_025414:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGACTGGCTGGTGTCTG
R:
CTGGGCCCTGAGGTAGTGAG
Band lengths:
190-935
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: