GgaINT0130570 @ galGal4
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8135048-8135333:-
Coord C1 exon
chr19:8135260-8135333
Coord A exon
chr19:8135170-8135259
Coord C2 exon
chr19:8135048-8135169
Length
90 bp
Sequences
Splice sites
5' ss Seq
TAGGTATAG
5' ss Score
5.16
3' ss Seq
CTATCTTATGATACTCCTAGGTT
3' ss Score
5.47
Exon sequences
Seq C1 exon
ATTGTTTGAATGGCTTGTTTTGGTCATAAACGAAAGCATTTATGCAGATACATCATTGTGGACCAGCTTCATAG
Seq A exon
GTATAGTTTTTCATCCCTAGTTTAACCGAGCAACCTTAAGCCCTTCAGCCTACTCCTAGATTAAAATGCACTATCTTATGATACTCCTAG
Seq C2 exon
GTTTGCTGGATGTTTATGGTTTTGAAGCCTTCCCTGAAAACAACTTGGAACAGCTTTGTATTAATTATGCCAATGAGAAACTGCAGCAGCACTTTGTAGCACACTATCTGAAGGCTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTGTTTTGGTCATAAACGA
R:
AGTGTGCTACAAAGTGCTGCT
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]