BtaINT0097872 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13183574-13184200:-
Coord C1 exon
chr19:13184062-13184200
Coord A exon
chr19:13183723-13184061
Coord C2 exon
chr19:13183574-13183722
Length
339 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TAACGGCATCCCTGCCTCAGTCC
3' ss Score
4.37
Exon sequences
Seq C1 exon
GTTAATGGCCACGGTTCAGGCTCTGCTGCCCACAGCGGGGAGTCCCTGAGGGAAGACCTGAAGGAGCTCCTGGGTGGGGAGGTCCCGCCGCAGCAGCTCAATGACCTCACCAAGGTGAATCCTGTGACGCTGGAGACAG
Seq A exon
GTATGCCTCCCCCGCCCACCCACCCCACCCCAGAGGGGTGCACCTTCTCCCAGAGGGTATTCGGCTCCGCTGCCTCGGGTCAGACAGGACGTGGACAGCCAGGTGGGCTGCTCCAGACCCCCGCCTGGCGGCTGCCCTCAGACTCCCCAGCACAGGCTTTGCTCCAGATGTGGGGTTCATCTTAATTAGATCTTTCTCATACCTGCTCATCAGGGAGAGGCTGGGCTCTCATGGCTCTTGGCTAATTGCAGAGGGAACTCTGGTAGGTGGGGTGTTGGTCTGTACGTGCGGCTGTGTCTCCATCTGAGCCAGAGTTTGCTAACGGCATCCCTGCCTCAG
Seq C2 exon
TCCTGAGGTGTCTGCAGGCCCGGTACATGGCCGACACGTTCTACACCAACGCCGGCTGCACCCTGGTGGCTATGAACCCCTTCAAGCCTGTCCCTCAGCTCTACTCGCCCGAGCTGATGCGAGAGTACCACGCTGCTTCTCAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(2.0=29.8)
A:
NA
C2:
PF0006316=Myosin_head=PU(6.8=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAATGGCCACGGTTCAGGC
R:
TGAGAAGCAGCGTGGTACTCT
Band lengths:
280-619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]