HsaINT0108459 @ hg19
Intron Retention
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34883382-34884033:-
Coord C1 exon
chr17:34883895-34884033
Coord A exon
chr17:34883531-34883894
Coord C2 exon
chr17:34883382-34883530
Length
364 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TAAAGGCATCTCTGCCTCAGTCC
3' ss Score
2.61
Exon sequences
Seq C1 exon
GTCAATGGCCACAATCCGGGGTCTGATGGCCAAGCCAGGGAGTACCTCAGAGAAGACCTGCAGGAGTTCCTGGGTGGGGAGGTCCTGCTGTACAAACTGGATGACCTCACCAGGGTGAATCCTGTGACACTAGAGACAG
Seq A exon
GTATGGGCCTCCCATTCCTCAGGAGTATCATCTCCAGGAGGTTGGAGGTGTAATGAGAGTAGTCAGCACAGCTTCTCCAGGTCAGACGGAGGTCGGCAGGACTCCTGATCTGGAGCCAGGTGGGCTGCTCCAGACCTCCGCCTGAGGGAGCATGACAGCTGCACCTGGGCTCCCCAGGGCATGCTTTGCTTCAGATTTGGAGCTCATCTTAATTAGATCTTGTATCTTTTCTTCAGGGAGCTGCTGGGATTTAATGATTCTTGGCTAATTGCAGAAAGAGGGCTGTTACTTAAGTAGATGTGTGTCTGTGTGTGTGGTTTGACTATATTTGAGCCCGAGTTTGCTAAAGGCATCTCTGCCTCAG
Seq C2 exon
TCCTGAGGTGCCTGCAGGCCCGGTACATGGCAGACACATTCTACACCAATGCTGGCTGCACCCTGGTAGCCTTGAACCCCTTCAAGCCTGTTCCTCAGCTCTACTCGCCCGAGCTAATGAGAGAGTACCATGCTGCGCCTCAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140-MYO19:NM_025109:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(11.2=29.8)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAATGGCCACAATCCGGG
R:
CGCAGCATGGTACTCTCTCAT
Band lengths:
276-640
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)