RnoINT0096972 @ rn6
Intron Retention
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72203091-72203695:+
Coord C1 exon
chr10:72203091-72203229
Coord A exon
chr10:72203230-72203546
Coord C2 exon
chr10:72203547-72203695
Length
317 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TAACACCATCTTTGCCTCAGTCC
3' ss Score
5.18
Exon sequences
Seq C1 exon
GTGAATGGCCACAGTTTAGGCTCTGATACCCAAGGCAGGACATCCCTCAAGGGCGACCTAAGGGAGTTCCTGGGTGGGGAGGTCCCACTGCACCAGCTGGATGACCTCACCAAGGTGAATCCCGTGACACTGGAAACAG
Seq A exon
GTATGGGCCTTCCTCTTCTTCAAAAGCATAGGGGTGCAACAAGGGTCTTGAGCATTGTTTCCTCAGTTCAGTCCACAAATTGAGACTCCTGACCTGGCCTCTGCCCCAGGGAGCCTGGCACTGCACCTGGGCTCCCCAGGGCAGGCTTTGCTCTAGGTTTGGGACTCGTCTTAATTAGATCTTATGTCTGTTCACTGGGGAGCTACAGGGTTCTAATGGCACTTAGCTAATTATAGAGGGAAGGCTGCTTAACGGATGTGTGTCTGGGGTTCTGTCTGTATTTGAGCCAGACTTTGCTAACACCATCTTTGCCTCAG
Seq C2 exon
TCCTGAGGTGCCTGCAGGCCCGGTACACAGAAGACATATTCTATACCAATGCTGGCTGTACCTTGGTAGCTCTGAACCCCTTTAAGCACATCCCTCAACTCTATGCACCAGAACTGATGCAAGAGTACCATGCTGCACCTCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852:ENSRNOT00000003886:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(13.1=29.8)
A:
NA
C2:
PF0006316=Myosin_head=FE(45.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCACAGTTTAGGCTCTG
R:
CTGAGGTGCAGCATGGTACTC
Band lengths:
278-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]