BtaINT0097877 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13173269-13174137:-
Coord C1 exon
chr19:13174035-13174137
Coord A exon
chr19:13173366-13174034
Coord C2 exon
chr19:13173269-13173365
Length
669 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACCCGTTCCCACCCCCACAGATC
3' ss Score
10.89
Exon sequences
Seq C1 exon
GGCCCAGCAGATGACGGGAGCTGCAGTTCAGACCTACCTCCTGGAGAAAACTCGAGTGGCCTGCCAGGCCCCCAGCGAGAGGAACTTCCACATATTCTACCAG
Seq A exon
GTGAGTCCCAGGCGGGGCCCACAGCTGCCCAGGTGCAGGGTGGAGAAGGGTCTGTGCCTCTCAGCCTACCCGCCCCGCCGCCCGCCTTGCTTCCTGCCTCCTCTTCGCCGGGCTTTCAGCGCTGCCACCCCACTTACTCCCACAAACCTCACGTCACACTCGCGTCTCGCCCTAGCCCTCGGCTCCCTGGGCAGTCCCAGGCCTGGAGGTGCGCTTGCCTTCTTTTCCCATCAGAGGGTCCTTGAGGCTGGGCCTGTCTCCACACGGGAAGCACTCACCTTCAGATGGAGGGCTGTCCTGGAACAGCAGCTGCCTCCACCAACCGAACAAAGCCTTCCCTAAACTGTGTCCCCTCCATTAGACCAAGGGTCCGCCGAGGTGTGGACAGTGTCTCGCTGCTCTCAGATCGGGACCGGGGGCTCCCCAAACAGGGTTAGGGTTTCCTCCTCATGCCACAGGCCCCCTCAGTGAGTGGGGTTTTTTTGCACCGAATGGAGATGCCCAGAACTATTTGCCACTGCTTTCCCGCCCCTGCCCGCCCTTGGCTCCCTACAGGGGCCTCTGGGTCTTGTGGTGTGGCTGCCACTCCCCCCCGCCGCCCGTCCAAGTCCATGCAGTCCTGGGCATCCCCGGTACCCCTGGCTCAGCCACCCGTTCCCACCCCCACAG
Seq C2 exon
ATCTACAAAGGAGCCCACGCGGAGGAGAGGGTCCGGTGGCGCCTCCCCGAGGGAGCCGCCTTCTCCTGGCTGCCCCACCCAGAGAGGACCTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCAGATGACGGGAG
R:
TTCCAAGGTCCTCTCTGGGTG
Band lengths:
198-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]