GgaINT0130565 @ galGal4
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8137825-8138236:-
Coord C1 exon
chr19:8138134-8138236
Coord A exon
chr19:8137922-8138133
Coord C2 exon
chr19:8137825-8137921
Length
212 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
ACTTTATTTTCTGTCTCCAGATC
3' ss Score
11.48
Exon sequences
Seq C1 exon
GTTCCACCATCTGAGTAGTGCTTCCATTCAGACTTTCCTTTTGGAGAAGACAAGAGTTGCCTATCAGGCCCCCAATGAAAGAAACTTTCATATATTTTATCAG
Seq A exon
GTTTGTGTTCAGTTAGTTTTGCTAAATGTTTCTGAGAAACACTGGGTATAAAATCACCGGATTTAGCACAGTTGTAACTTCCAATATTTAACAGTTCATCTGTCTGCCATACTTCCAAATGAATTTGTACTCCCATTCAATTATTATTCCCTGTCTACGTGATGTAAATACCCAAGGCAGAATCTGGTCATTACTTTATTTTCTGTCTCCAG
Seq C2 exon
ATCACAAAAGGTGCCACTGCAGAGGAGAGACTGGCATGGAACCTTCCAGAAGGGGCTCACTACCGCTGGCTGCCAAATTCTGAACGAAACTTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCACCATCTGAGTAGTGCT
R:
TAAGTTTCGTTCAGAATTTGGCAGC
Band lengths:
196-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]