HsaINT0108445 @ hg38
Intron Retention
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36513629-36514548:-
Coord C1 exon
chr17:36514446-36514548
Coord A exon
chr17:36513726-36514445
Coord C2 exon
chr17:36513629-36513725
Length
720 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
CCACCTACCCTTCTCCACAGATT
3' ss Score
10.56
Exon sequences
Seq C1 exon
GGCTCAGCAAATGACTGGAGCCGCAGTCCAGACCTACCTCCTAGAGAAAACTCGAGTGGCCTGCCAGGCTTCCAGTGAGAGGAACTTCCACATCTTCTATCAG
Seq A exon
GTTTGTGCCAAATGGGGCCACAGCCCCCCAGATGCGAGACAGGGATGGGTCCGTGTTTTTCAACCCCCCACTCCCCAGAATGCTCCATACCTGGTTCCTTCACCTAGCTTTTGATGGAGCCACCACTTTATCCTGCAGACTTTACATGCAGCACTTCTGCCTCACACTGCGCCTTGGCTCCCAGCACAGTTGTGGCCTGGGAGTATGTTTTACCTCCTCCATCAGACCAGAAGGTCCTTGAGGCTGGGACTGTATCTCTAGGGTGGAAGCCGTGTCACTCTTATCATTTTAAGGGCTCTCCTAGAATGGCATCTGTCGCTAACAGAACAAGGGCTTCCCTAGAGTTGTGCCTTTTCCATCGGACTGGGAGTCCCCCAAGGCATGGATAGGATATCTCCCTTTCTCTCAAAATCGGAGCATCCTTAGGTGATGGGTATGCCTCCCACGTCAAGACGACGGACTCCCTGGGCAGGAGTTGTCCTTTTTTCACCAGACTGCAGGTTTCCCTAGAGCAAGGTTCTTTTGCATCAGGTTGGAGACATCCAGGGCTATGTTTACGGCATCTTTTGCCCCCATACCTGCCGTGGGCTCTCGGAAGGGACCTCTGAGCCTTGTGATGTTGCTACCAACTCTCCTCTTATCCCAACCCCATGCCTGCCTATGCAGGCCTGGGCTTTTCTCAGACCCCCTACCCAGCCTCCCACCTACCCTTCTCCACAG
Seq C2 exon
ATTTGCAAAGGAGCCAGTGAGGACGAGAGGCTCCAGTGGCACCTTCCTGAGGGAGCTGCCTTCTCCTGGCTGCCCAACCCAGAGAGGAGCTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259:ENST00000610930:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAGCAAATGACTGGAGC
R:
TCTAAGCTCCTCTCTGGGTTGG
Band lengths:
198-918
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development