BtaINT0098140 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003626 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:26248205-26248644:-
Coord C1 exon
chr2:26248540-26248644
Coord A exon
chr2:26248305-26248539
Coord C2 exon
chr2:26248205-26248304
Length
235 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
GGCGATGGGACTCCATGAAGGGC
3' ss Score
-0.34
Exon sequences
Seq C1 exon
CTGTGTAATGGGGGCTCAGTCACCGAGCTTGTCAAAAGTCTACTTAGGTGCAACCAGCGGTTGGACGAAGCAGTGATCTCATACATCTTATATGGGGCCCTCTTG
Seq A exon
GTAAGGACGTCCTTCAAGGTGGGGTCGAGGGGGCAGTTTGTCATTGGTTGGCTCCCCACAGCATACTAACAAGGGGAAACTGCTCTATAATATGCAAGGTGTATTAACAGCAGGGAGGTGTAGCCTAATATGGACTTTGATTAGATTTTAATAGTAGGGTAATTGTTTAAAACTAACCGTTGCAAATTTTCCTTTTCTCTTTCCTGTTGTTTGGTGGCGATGGGACTCCATGAAG
Seq C2 exon
GGCCTTCAGCATTTGCACAATAACCGAATCATCCACCGTGATGTCAAGGGGAATAACATTCTTCTGACAACAGAAGGAGGAGTTAAGCTCGTTGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003626:ENSBTAT00000061222:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.7=100)
A:
NA
C2:
PF0006920=Pkinase=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTAATGGGGGCTCAGTC
R:
AAAGTCAACGAGCTTAACTCCTCC
Band lengths:
204-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]