MmuINT0104385 @ mm10
Intron Retention
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70105377-70105753:+
Coord C1 exon
chr2:70105377-70105481
Coord A exon
chr2:70105482-70105653
Coord C2 exon
chr2:70105654-70105753
Length
172 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
GGTGCTGGGACACCGGACAGGGC
3' ss Score
-0.95
Exon sequences
Seq C1 exon
CTGTGTAATGGGGGCTCTGTCACTGAGCTTGTCAAGGGCCTTCTGAGGTGCGGCAAGAGGCTGGACGAAGCTGTGATTTCCTACATTCTGTATGGAGCCCTCTTG
Seq A exon
GTAAGAATGTCTATTGTGCACTGCCTGGCTTAGCACGTGAACTATGGAGAGTAAACTTCGGGATGGAATAACCTAATGTGTGCTTTGATCAGGGCTGCTGGGTCCATTTGCTGACAGCTCTGCTTTCTTTCTTTCTCTCTCTGTCCCGCCATGGTGCTGGGACACCGGACAG
Seq C2 exon
GGCCTTCAGCATTTGCACTGCCACCGAATCATCCACCGAGATGTGAAGGGGAATAACATTCTTCTGACGACAGAAGGAGGAGTTAAGCTCGTTGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064:ENSMUST00000112241:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.7=100)
A:
NA
C2:
PF0006920=Pkinase=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTAATGGGGGCTCTGTC
R:
AGTCAACGAGCTTAACTCCTCCT
Band lengths:
202-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types