RnoINT0097209 @ rn6
Intron Retention
Gene
ENSRNOG00000030022 | Myo3b
Description
myosin IIIB [Source:RGD Symbol;Acc:1560313]
Coordinates
chr3:56364939-56365329:+
Coord C1 exon
chr3:56364939-56365043
Coord A exon
chr3:56365044-56365229
Coord C2 exon
chr3:56365230-56365329
Length
186 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
GGTGCTGGGACATCATTCAGGGC
3' ss Score
1.69
Exon sequences
Seq C1 exon
CTGTGTAATGGGGGCTCCGTCACTGAGCTTGTCAAGGGCCTCCTGAGGTGTGGTAAGCGGCTGGATGAAGCTCTGATCTCCTACATTCTGTATGGATCCCTCTTG
Seq A exon
GTAAGAATGTCCGTGGTGAAGAGGGGATGGCTGTGTACTGCTGGGCTTCTCACTGCACGTTAACTATGGAGAATAAACTCTGGGATGGAATAACCTAGTGTGTGCTTTGATTAGGGCTGTTGGGTCCATGTACTGACAGCTCCTCTTTCTTTCTCTGTCCTGCAATGGTGCTGGGACATCATTCAG
Seq C2 exon
GGCCTTCAGCACTTGCACCATCACCGAATCATCCACCGAGATGTGAAGGGGAATAACATTCTTCTGACGACAGAAGGAGGAGTTAAGCTCGTTGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030022:ENSRNOT00000037188:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.7=100)
A:
NA
C2:
PF0006920=Pkinase=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTAATGGGGGCTCCGTC
R:
AGTCAACGAGCTTAACTCCTCCT
Band lengths:
202-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]