GgaINT0045775 @ galGal3
Intron Retention
Gene
ENSGALG00000009602 | MYO3B
Description
NA
Coordinates
chr7:19898527-19898993:-
Coord C1 exon
chr7:19898889-19898993
Coord A exon
chr7:19898627-19898888
Coord C2 exon
chr7:19898527-19898626
Length
262 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TTGTTACTGCTGGCGTATAGGGC
3' ss Score
4.21
Exon sequences
Seq C1 exon
CTGTGCAATGGAGGGTCTGTCACAGAACTTGTCAAAGGTTTGCTGAAGTGTGGCCAACGTTTGGATGAAGCAATGATTTCATATATCTTATATGGTGCTCTCTTG
Seq A exon
GTAAGATTGTTCACTGGGCTTGTAATGACAGCAGAGGGTGCAATTTGCTCATCTCATACATATATTTTCCATTTATAAAGAATGATAATGTTGACAATATTATGTGGGCTATTATTGCAGCAGGAGTTGTATCAAGCATGTAATCTGGTGGACAGATGTTTCTATAGACTATGTGCAGATTGTCTTCATTACATTCCCTAATAGTAGGGTAATTGTTTTTAAATAAGGGAGTAAACTTATTTTTGTTACTGCTGGCGTATAG
Seq C2 exon
GGCCTTCAGCATTTACACAATAACCGGATCATTCATCGAGATGTCAAAGGGAACAACATTCTTCTGACAACAGAAGGTGGAGTCAAGCTCGTTGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602:ENSGALT00000015648:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.7=100)
A:
NA
C2:
PF0006920=Pkinase=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCAATGGAGGGTCTGTC
R:
ACGAGCTTGACTCCACCTTCT
Band lengths:
197-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]