BtaINT0098175 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58145952-58147560:+
Coord C1 exon
chr10:58145952-58146102
Coord A exon
chr10:58146103-58147277
Coord C2 exon
chr10:58147278-58147560
Length
1175 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
CGTATGAACTTCTCCTTTAGTCT
3' ss Score
5.24
Exon sequences
Seq C1 exon
GGCTTTATGAAACACAACACCTCTCGCCAGAATGAACACTGCCTCACCAATTTTGACTTGGCTGAGTACCGGCAGGTGCTCAGTGACTTGGCAATTCAGATCTACCAGCAGCTCGTGAGGGTGTTAGAGAACATCCTTCAGCCAATGATCG
Seq A exon
GTAAGTCCAGGGCATTGCTGACGTCCAAGTCTGTCTTGGGGCACATGTGTCAGAGCATGTATTCATGTGGAGAAGGTAAAGTAGTAAGACTCAGTCTCAAAATTAGCTGAGGAATCTCAGAACTGTAGCCGTGACTAACTGGGGTACGGCAAAGTCCCTGCTTCTGCGTGATGGAAATGGCAGGGTCTATTAATAGTTTCCCTCTCTAATGTGTAATGCCTCTCTCTTAAGATTGGGTTATGCTTTATATCCAGCAACATATCTCAGACCTTGTCCAGTTTTCTAAAACAAAAATACTTGGAACTTTCATCGAGGGCATTACTGCAGAGAACTTTCTAGGGACCCAACTAAAACTAAAGAGACTGAGAAGGGTTTGCAGATTACCTGATAGGCTATAGTAACAGGGCTGGAAAGCTACTATGGCAACAAGAACAGGGCTCAGACACTCCATGCTGAGTTGTTCATCTCATGGCCCCTGTAGAATCATTAAAAGCAATTTGGTTTAAAGTTGCAGTTTCTCATTGGATGAGCAACTGATCAGTGTGTGTGTCTATGTATATGAGATTCCATGTACCTCTCTTTATATGTGTGCACTCACTCTGGGTATGCATGTACGTATCAAGCCTCCTATATTCCTTTGGAAAGTGTAGCAGGTGTGAAATTGGAATTAGAGGGCATGTAAAACTTGCAGGCTGCTGATTTTGTGCGAAGCTGTTGAGGGAAGCTCAGGGCAAGGAAGGGCCCAGCTCTTCAGCCCCATGTGACTGCCCACTCCCAAGACCACTGCCTGGTCTCCTGCTTTTCTTACTGCTTGATTTGTTTGCTTCTGAGGCTCGATACTACTGGAGAATACTTATCTTCTCCCTAATTGCCTCTCTCTTAAAAACCTCTCTCTCAAAAATCCTCCCAAGAAACTTTACACATGTGCTATTAAGACTACTGTTTCATATTTTAGAAAATAATCCATTAAAATTTCATGGTAAATTTTTGCATTTAAGGATAATTCTTTCATTGTTTAAAATCCAGATGCCCTTTTATTTGTAGTTCCTTTTCCTTCTATTTTGATGCTCAAATCATTTTCCTAAATTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGCATGTGCGTGTGTTTCCATCAGAATCTTCTCTGACGTATGAACTTCTCCTTTAG
Seq C2 exon
TCTCCGGAATGCTGGAGCATGAAACCATTCAGGGTGTCTCTGGGGTGAAGCCCACAGGGCTAAGAAAGCGAACCTCCAGCATCGCTGACGAGGGTACCTACACACTGGACTCCATCCTGCGACAGCTCAACTCCTTCCACTCGGTCATGTGTCAGCACGGCATGGACCCCGAATTGATCAAGCAGGTGGTCAAGCAGATGTTCTACATTGTGGGGGCCGTCACCCTGAACAACCTCCTTTTGCGGAAGGACATGTGCTCCTGGAGTAAAGGCATGCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489:ENSBTAT00000008516:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0184314=DIL=PU(31.1=34.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACACAACACCTCTCGCCA
R:
ATCTGCTTGACCACCTGCTTG
Band lengths:
342-1517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development