GgaINT1018723 @ galGal4
Intron Retention
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8326531-8327783:+
Coord C1 exon
chr10:8326531-8326681
Coord A exon
chr10:8326682-8327500
Coord C2 exon
chr10:8327501-8327783
Length
819 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
ATGTTGTCAATCCTCTGCAGTTT
3' ss Score
6.55
Exon sequences
Seq C1 exon
GGGTTTATGAAGCATAATACACCTCGTCAGAATGAGCACTGCCTCACTAATTTTGACTTAGCTGAATACAGACAAGTCCTGAGTGACTTGGCTATTCAGATCTACCAGCAACTGGTCCGCGTGTTGGAGAACATTCTGCAACCCATGATTG
Seq A exon
GTAAGGCAGAGCTGAATTCCTCAAACCGTAGTACTAAAAGGAAAATCGTGATGGCAATAATATGCTGTATCTTATATTTATTCCTGAATGATACAATTTTATTAGTAGTCCTTGTGGTATTCTGCTTATAGATGACAAGGACTGTGCTGTACAGGTTGGATTAGAGGCGGCTGGTTCTTCTGACAGTGACAGAATAAATCAGTTTACATTGTAAATGTTTGTCATAAGTCATGTATTTACAAGAGAAACCACTGCTAGGACAGTCTGATATTTGTGTGTTGGGAAATATCTCTTGGAAAAATTGGTCTTTAATTACATGAGAAATCATAATTAAAATGAATATGGAGGAGAAAGTGGCTGGCCATCATTACAGGCAGCAATCAGCAACTAAATAGCTAGCAGTGGTGAAGCTCACATTCAGAGAGAGTTTTTCATTTCATTTCTTTTTTTTCCAACAGTGTTCTCTCAAATTTTCATTATGCTTTCTGATCACACCATTTAGAAGAGGGGAACAGCTCTTGGTATGCTGACTCTGCTGCTCCTATGATCAGGTGGATGAAAAGAGTATTTTGCTGAGCTACAGCTACAGACACTTTCAGACACTCACACTGGAATATCTGTAAAATGCTGTCAGCTCAGATTTTGCAAAACATAGTAGGACCCTGAGAGAATTGCTGGAAGTTATGGTAGAGTGTGGTGAGCAGAAAGCTCAACGTGATTTCTCTGTGTAAATAGCCAAGAGGATTTTGTTGGTTTGCAGAGAGTGCTTGCACATAGTCTATTTTCAATCATTAAAATAATGTTGTCAATCCTCTGCAG
Seq C2 exon
TTTCTGGAATGCTGGAGCACGAGACTATCCAGGGTGTCTCAGGGGTGAAACCAACAGGGCTGCGGAAGAGAACATCCAGCATTGCTGATGAAGGAACCTACACTTTGGACTCCATTATTCGACAGCTGAACTCTTTCCATTCCGTGATGTGTCAGCATGGAATGGATCCAGAGCTGATCAAACAGGTTGTCAAGCAGATGTTCTACATCATTGGGGCTGTAACACTTAATAATCTTCTCCTGCGCAAGGACATGTGTTCATGGAGCAAAGGAATGCAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0184314=DIL=PU(31.1=34.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTCCTGAGTGACTTGGC
R:
CATGAACACATGTCCTTGCGC
Band lengths:
342-1161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]