RnoINT0097243 @ rn6
Intron Retention
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82149077-82151450:+
Coord C1 exon
chr8:82149077-82149227
Coord A exon
chr8:82149228-82151169
Coord C2 exon
chr8:82151170-82151450
Length
1942 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
CACTTAAAATATTTCTACAGTCT
3' ss Score
4.99
Exon sequences
Seq C1 exon
GGCTTCATGAAACACAACACGTCTCGCCAGAATGAACACTGCCTCACCAATTTTGACCTTGCTGAGTATCGGCAAGTACTGAGTGACTTGGCCATTCAGATCTATCAGCAGCTTGTGAGGGTGTTAGAGAACATTCTTCAGCCAATGATAG
Seq A exon
GTAAGACCAGTGTTGCTGTGCTTGCTGACAATGAGGCCAGTGATACATGTGACAGACGTGTTCATGTGGAGAGCATAAAGTGCTAACTATGACAGAAATCAGTCTCCACATGACAGAGGCACTAGAGTCCGTGCTTACATCCTCTTTCTGAAGACTGAGCTCTGTCTTCTTTCTAGCAGTAGACTTTACTCCTTTGTCTAGTTGTCAGAAAGACTTGCTGTGGCACTATTACATAGGGCTTCCTAGGAGACCACTGAAAACCAAGGAGGCTGGGATGGGTTTGTACTTTGCCCAATAGTCTATAGTAAAATGGCTGGGAAGGCACTATAGCAATAAGAGCTGCTATCATAGGTGTGTATAGGACACTCCATGGTGTGTAGTACACTTCCTGGAAATGTCAAGGCAAGTGGTTAAAAGTAATATTTCCTGTTGACTGAGTGGTACATGTGCTTCTGATTATGAATGTAAAGGAGTGTGAGTCCATGCACCTCTCTTTTTTTTTAAAGATTTATCTTATTTATATTAATACTCTGTCTTCAGACACACAGAAGAGGGCATCAGATCCCATTACAGATGGCTGTGAGCCACCATGTGGTTACTGGGAATTGAACTCAGAGCCTCTGGAAGAGCAGTTGCTGCCCTTAACCACTGAGCCATCTCTCCAGCCCGCACCTCTCTTTATACTCATTCTGGGTGGTCATTTATATGCTGTCCTATCTGATTCCCTTAGGATGCATGAATTTGAAGGTTTTTAATGTAGCAAATTTGTGGGGTTTTTTTTTTCAAATTACCAAACACTGTTATCTCCAGGCAAATTAGAGGCTCTTCACTGTTTCAGGCTTGTATTTTCTTACCTTGACCATGTGTTCTCCACATGTCTACATTTTTACCTCCCTTAGTGAGCTCACAGATTTCATTTTCTTTCAGAGGCCCGTAGTTAAAACAGCTAGGGACATAAAGTCTGTGGAGGTCATATGAGATGGCTGTTATCTCTTTTCTTGAGCTTTAGGTAAATTTAGTTGTAAATTTAAAACACTGTAGATTGGCCAAAATGCAGGAAGTAACACAGAGTAGCAACTAACTTCCACCATTCTTTCCTGTCTCTTGCCTATGTGTAGTGGCTGAACAAATAGTTTGCCTCTAAACTGTCCCATTTTGCTCCATCTCCCAGTCATTTAATAGCAACAACAAATGCTTTGAATTAGTATAGGGTTTGTAGGGAGCTGAGCTTAGCACAAGGAAATAGAAAAACAATCCAGACGTAATCATCGATTTAAGGGCCTCCCAGGCAGGAATGGGCATATCTGAGTAGACATGTCAGAAGCTTTCTAAGGAAGCATTAGCCAGACACTGAGAGAGAGGTGAGACAGCAGTACAACAGAGACAAGTCCAGAGAAACCAAGGCTATCCCACCGTCTCACTGCAGTGTGAGGGCCTCAGGACAGAGACTGGCTCAGCTCTCCAGCTCCTTGCCCTCAACTCTGACAGGTCTCCTCCAAGACTCTTCCCAAAGCCCTACCTTTCTCAGCGTCATGTTATTGTGTTGTTGTTGTTGTTGTTATTTGGATTTGTGGCTGTTTCTTTAATATCTGAGATCAAATACAAAGAACACTTACTTGACCACTCTCATAAACTTCTCCAGTACCACATGCAAGTGCAGCCCCAAGGCTGCTGCTCAACTTTAGAAAATGCAGCAGTGAAATTACTTAATACTTCATTAAAGTTTAGAATCCAAAGGCTTATTCCGGGGACAGTTCCTTCTTCTACTATTTTCATCCTCTTATTTTCTAAAGTGTGTGTATTTGTGTGTGTGTGTGTACACTCGAGTGAGAGAGAGGGGTGACGGAGGGAGGGAGGGAGGGAAGGGAGGGAGGGAGGGAGAATGAGTGTGTGTGTGTGTTCTTACCTCTGAATCATTTTAACACTTAAAATATTTCTACAG
Seq C2 exon
TCTCAGGCATGCTAGAGCATGAAACAATTCAGGGAGTATCTGGGGTGAAGCCCACAGGACTCAGAAAGCGAACCTCCAGTATCGCCGATGAGGGCACCTACACACTGGACTCCATCCTGCGGCAGCTCAACTCCTTCCATTCCGTCATGTGTCAGCATGGCATGGACCCAGAGCTAATCAAGCAGGTGGTCAAGCAGATGTTCTACATCGTGGGCGCCATCACCCTGAACAACCTCCTGCTGCGCAAGGACATGTGCTCCTGGAGCAAAGGCATGCAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866:ENSRNOT00000079535:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0184314=DIL=PU(30.2=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACACAACACGTCTCGCCA
R:
ATCTGCTTGACCACCTGCTTG
Band lengths:
342-2284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]