BtaINT0098208 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58243119-58243344:+
Coord C1 exon
chr10:58243119-58243182
Coord A exon
chr10:58243183-58243263
Coord C2 exon
chr10:58243264-58243344
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
TCACCCTCTTCATGTTTCAGGCT
3' ss Score
10.13
Exon sequences
Seq C1 exon
AAAAGATGTCAGAGATCACCAGACAACTTCTTGAGAGCTATGACATTGAAGATGTAAGAAACAG
Seq A exon
GTAATCATTTTTGCATGAACAAGTATTTAGAAACACATAATACATGAGAGAAATGATTCTCTCACCCTCTTCATGTTTCAG
Seq C2 exon
GCTCTCTCTGGAAGATTTGGAACATTTAAATGAGGATGGAGAACTTTGGTTTGCTTATGAAGGACTAAAGAAAGCAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763:ENSBTAT00000004905:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(9.5=100)
A:
NA
C2:
PF131661=AAA_13=PD(3.6=28.6),PF131661=AAA_13=PU(0.9=7.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGTCAGAGATCACCAGACA
R:
CGTGTTGCTTTCTTTAGTCCTTCA
Band lengths:
143-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development