MmuINT0104487 @ mm9
Intron Retention
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75131954-75132820:+
Coord C1 exon
chr9:75131954-75132017
Coord A exon
chr9:75132018-75132739
Coord C2 exon
chr9:75132740-75132820
Length
722 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
TCTCTTTCTTTGCTCTCCAGGCT
3' ss Score
9.87
Exon sequences
Seq C1 exon
AACGGATGTCAGAGGTCACCAAGCAGCTTTTGGAGAGCTATGACATCGAAGATGTTAGAAGCAG
Seq A exon
GTAATCGATTTTACATTATCAGACATTTACAAATGTAAAACAGATTGGAGGCATGACTCGGCAAAGTGTTAACATGTGAGTGTGATCCCAAGAGTCCGTGCATTTCAGAAGAAGACTCACATGCGTGTAACCCACCAATGGGGAGGTAGAGACAGAAGAATCCCTGCACTTACCGAGAAGCTAGTGTAGCCTACTCAGTGAGGTCCAGGCCACTGAGAGACCCTGCTTCAAAATGGTCTTGGGGGTTGGAAAGACAGATGGTTTCGTGGGTAAGAGTGCTTGCTGCTCCTGCCGAGATCAGGTCCCTGCAGCCATGTCAGGTGACTCACAATCACCTGCAACTCCAGCTTCAAAGGGCATCTGATGCTGTGTTCAGGTCTCCACCAGCATCTACACACACACTCATACACACACACTCACACACACATGCACATTCACACACACACACTTATACACATGCACACTCACACATGCATGTGCACACTCACACCTACACACATGCACACACACTTACATACATGCACACTCACACACCTACACATATGCACACACACACAATGTGCACCCACACACATGCACACTTATGCACACTTACACATATGCACACTCACTCACTCACACACAATCTTTTATATAGCAAGGTGAACCACCCTGTAGGGACGACATACACAAGCCATGTAAAGGTGGGCAAGGCTTCTTTGCTCTCTTTCTTTGCTCTCCAG
Seq C2 exon
GCTCTCTGTGGAAGATCTGGAACATTTAAATGAAGATGGAGAACTTTGGTTTGCCTACGAAGGACTAAAGAAAGCAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590-Myo5c:NM_001081322:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: