GgaINT1018786 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8353680-8353905:+
Coord C1 exon
chr10:8353680-8353743
Coord A exon
chr10:8353744-8353824
Coord C2 exon
chr10:8353825-8353905
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
GATTCTGCCTTGTGTTCTAGGCT
3' ss Score
9.84
Exon sequences
Seq C1 exon
AAAAGATGTCAGAAGTTACAAAGCAGCTTCTTGAAAGCTATGATTTTGAAGATGTAAGAAGCAG
Seq A exon
GTAATTTACTGAGTTCTCCTTAACAAAAAAATTAAGGAATTTTGTTCACCTGCCTGCTATTGATTCTGCCTTGTGTTCTAG
Seq C2 exon
GCTGTCCACAGAGGATTTGGAGCACTTAAATGAAGATGGAGAATTGTGGTTTGCTTATGAAGGCTTGAAAAAAGCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGTCAGAAGTTACAAAGCAGC
R:
TTTTTCAAGCCTTCATAAGCAAACCA
Band lengths:
135-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]