DreINT0100863 @ danRer10
Intron Retention
Gene
ENSDARG00000074622 | myo5ab
Description
myosin VAb [Source:ZFIN;Acc:ZDB-GENE-050411-72]
Coordinates
chr25:7447623-7447853:-
Coord C1 exon
chr25:7447816-7447853
Coord A exon
chr25:7447704-7447815
Coord C2 exon
chr25:7447623-7447703
Length
112 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGT
5' ss Score
7.97
3' ss Seq
TCCATTCTTTTCTCTCTCAGATC
3' ss Score
11.61
Exon sequences
Seq C1 exon
GAATTAGGAACTGTAGGAGATTCAGGTGATTCGAGCAG
Seq A exon
GTTCGTCAGTCTTTATATTTCAAAACTTTTTTATTTCAAGTCCACAAATATGCGTTCACTCTTCAACATTCTTGCTTTTTAATAATAGAGTGTCCATTCTTTTCTCTCTCAG
Seq C2 exon
ATCTCCAACACTGGACCTGACAGAGCTTAATGAGGATGGAGAACTCTGGATGGCTTATGAGAGCCTGAAGGAAACGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074622:ENSDART00000089034:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.321
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTGTAGGAGATTCAGGTGA
R:
CTGTTCGTTTCCTTCAGGCTCT
Band lengths:
114-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]