HsaINT0108775 @ hg19
Intron Retention
Gene
ENSG00000197535 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:7602]
Coordinates
chr15:52635314-52638658:-
Coord C1 exon
chr15:52638558-52638658
Coord A exon
chr15:52635395-52638557
Coord C2 exon
chr15:52635314-52635394
Length
3163 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TTGTTCCTTTTGCATGGAAGATC
3' ss Score
5.2
Exon sequences
Seq C1 exon
AATACAATGACAGATTCCACAATACTTTTGGAAGATGTACAAAAAATGAAAGATAAAGGTGAAATAGCACAAGCATACATTGGTTTGAAAGAAACAAATAG
Seq A exon
GTAAGTTGATCCTTCTTTTATTCATTTTGGTTTAATTATATTGATCTTTAGCCTTCAAGCCAGCCTCTTGTACAGTAAAAGTGTTCATACATTCCTTTATATTAGACATTAACTGGCCTTCAAAGGGAATCCAAGGTTTCCAGTGTATTTCTAGTTAAGATCTTCATTATAATATAAGGTAATAGTATTGACAAAAGGTGTCAGGGAAAATGTGCTTTAAATCAAAGCAAGATTTTAAAAATATTTAATGTCTTAGCTTTAAGGGGCTGCCTTGAGAAGAAAACTACCTGCTCAGGTCATACAATCTTAGGTAGTCACTTTCATTTGTTATTCAGGATGGTTATTTGTGAAGGTTTGTAGGGGCAACTGCAGTTTTCAATATTTGAAACTTAAGAGTGAAAAGAAGTGATGAGGTATCTGGAATCACTCAGTGTTGGCCATGTAACTCTAAAAGGGCACCATGACTTCTAGGATAGAAGAATGAAGGCTCATATCTGGAATTCCCCTTGGCCTTACTACCACCCTCCTTCCCAGCAAAGTCTATTGGTCTGGGGCTCTTGATGGATAGTTTCAGGATTGGTAAACATACATACTTTATAAACTGAAGAATATTGCCATACAAAAAGAAAGGTGCAGTCAGCCCTCAATATCCATTGGATCCCTATCTGTGGAGTCAACCAATGGAGGATGGAAAATATTTTTTAAATTACATTTGTACTGAACATGTACAGACTTTTTTCTTATTTCTTTTCTTTATCTTTCTTTTTTTTTTTTTTGAAATGGAGTTTCCCTCTTTCGCCTAGGCTGGAGTGAAGTGGAGCAATCTCAGCTCACTGCAACCTCCGCCCCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTATAGGTGCCCACCACCACACCCGACTAATTTTTGTATTTTTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGGTCGTCCCGAGCTCCAGGCCTCAGGTGATCCACCCGCTTCGGCCTCCCAACGTGCTAGGATTACAGGCATGAGCCACTGCGCCCGGCCCTATCATTATTTCTTAAACAATACAGTGTAACAGTTATTTACAGAGTATTATAAGTAGTCTAGAGATTACATATTACAAGTTTTTAGGTATTATAAGTAATCTAGAGATGATTTAAAGTGTACGGAGGATGTACATGGTTATATGCAAATAGTATGCAAATTTTATATAAGGGATTCGAACGTCTGTGGATCTTGCTATCCAAGGGAGGACCTGGAACCCAATGGATATTGAAGGATGACTGTGCTTCTTATCTTCTTTTATGGACAAGGGTGGAGAATGCTTATAAAAGTATTTGGTTATACTTAAATTTTAATTTATCAGTTTAAATTATAAACATATGTTATATCTAAGAATGTGTTAATATAGAAAGAACTGTATTGTATCACAATGTTCTTCCATCCACTTAGCTATTCTATCACCAGTGTGCCTACTTCATGCCAGGCCTTGTGCCACATACTGGGAATACAGTAATAAGCAAGATAAATGCGGTTCCTACTCTCACTGAGATTATAGGCTGCTGGGGAGACAGCTGAGAGGGTTTGGACTTTATTCCAAAGATAATGGAATCCTCTGAAAGGTGTTAAGTAGGAGAATGGTGTGATGAGATTTGATTTTTGGAAAGCTAGCCCTGGCTGTTATGTTAGAGAATAGACTGCAGTAGAACAAAATTGGAAGCATAAAGGCCAGAGAGTATTCCTGTAACCCAGTGATTATGGTGACTTGGGCTTGGCTGGTGGCAGTTAGGATTGACAGAAATGGGACGTTTTGAAAGATACATAAGAAGACGAAGTCAGAAAGCTGTTTGGTTTATTGAATGTGTGGGCGAGGGATGGAGAAGCCTGAAGGTGACTCCGTGGTTTCTGCTATCTTGGTTAGGTGTGGTGATACCGTTTTGTGATCGTGGGACTGGAGTGTGGGGAAATGCACAGTGAAGATGATCAGTAGATTTATACATATGGATTTAAGGAGCCAGGAAAACATCCAGAGAAAGAAATCTATTAGGCAGTTGAGTATATAAATCTGTAGACAGGAGAGATGTGTGTACTGAGATAGAAATTTTGAAGTCATCAGAGTATAATAATACAATGGAAACCGTGTAAATAGGTGAATTCTCTAGAGAGATATGAACTCTCTAGATGTAAAGTAGAAGACAATGCCTGGAATTTGGGTTATGTAAACATAACAACAATATAGCAGGAGTAAGAACCTGGACTCCAGAGTCAGTGCTGGGATCCACTACTTACCAGCTGTGTAACCTCTATGGGTATCTTACTTCCAAGCCTCTGCGTCTTCCTCTGCAATGTGGCAAATGACTTGTTGGGTTACTGGGGAAACTGAATTAGTACATGTGGAAAGAATGTAGAACAGCATCTGACACTGAGCAAACACTCAAAAAATATTATTTTTATATTCTAAGTGGAAAATAAATGATTACTAACATTATCATTACTAATTATACGTTTTTAATAAGATGTGATACATCTCTAATATAGCAGTTTTTCCAGGCATACAATTAATTTTTGACACAAAAAAGCTTTTAAAAATCATGTCATAAAAGCTGAGAACCTTGGACATGTTCTGATTTATGTTACTGCTATAAGAATTTTTAAAACTGGTTTTTTAATGTGGGAAATTAGGTTTTATTAAGCTAAAAACGTTCCTACCTAGAGGACTTAAAAATTCATCTTGAAAAATATTATGAAGTTTGCCACACAAAGACAGTAGCTGAAGTTTTTGTTCTATATGTGTCATAACCTCTAATACAATATGTGATGTATTAGATCACTTTGCTAGCTGAATAAAACATCAAAAACAGAACCTCTTTCTCACCTTCCAGTCATTTCTTATTTTGCAGGTAAAGTAGCTCTACATCCTTGATTATTTTGCTTTAATTTCTATCCATTTACATGTGATGCTACATGTTACTCATTTTTAAAAATTAACCAAAAATAATTTTTGTGGTAATGTCTTAAAGTTGTCATAATGAATAAAAACAAACTTATAAAATGTTGAAATACTGCATGCTGCTGTTGACCATCGTCACCTCATCAGCATCCTGTATCCTTTTGTGTTTTGCATTGTTGTTCCTTTTGCATGGAAG
Seq C2 exon
ATCATCTGCTCTGGATTACCATGAGTTGAATGAGGATGGAGAGCTGTGGCTGGTTTATGAAGGGTTAAAACAAGCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535-MYO5A:NM_000259:30
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=NA C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)