HsaINT0108775 @ hg38
Intron Retention
Gene
ENSG00000197535 | MYO5A
Description
myosin VA [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr15:52343117-52346461:-
Coord C1 exon
chr15:52346361-52346461
Coord A exon
chr15:52343198-52346360
Coord C2 exon
chr15:52343117-52343197
Length
3163 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TTGTTCCTTTTGCATGGAAGATC
3' ss Score
5.2
Exon sequences
Seq C1 exon
AATACAATGACAGATTCCACAATACTTTTGGAAGATGTACAAAAAATGAAAGATAAAGGTGAAATAGCACAAGCATACATTGGTTTGAAAGAAACAAATAG
Seq A exon
GTAAGTTGATCCTTCTTTTATTCATTTTGGTTTAATTATATTGATCTTTAGCCTTCAAGCCAGCCTCTTGTACAGTAAAAGTGTTCATACATTCCTTTATATTAGACATTAACTGGCCTTCAAAGGGAATCCAAGGTTTCCAGTGTATTTCTAGTTAAGATCTTCATTATAATATAAGGTAATAGTATTGACAAAAGGTGTCAGGGAAAATGTGCTTTAAATCAAAGCAAGATTTTAAAAATATTTAATGTCTTAGCTTTAAGGGGCTGCCTTGAGAAGAAAACTACCTGCTCAGGTCATACAATCTTAGGTAGTCACTTTCATTTGTTATTCAGGATGGTTATTTGTGAAGGTTTGTAGGGGCAACTGCAGTTTTCAATATTTGAAACTTAAGAGTGAAAAGAAGTGATGAGGTATCTGGAATCACTCAGTGTTGGCCATGTAACTCTAAAAGGGCACCATGACTTCTAGGATAGAAGAATGAAGGCTCATATCTGGAATTCCCCTTGGCCTTACTACCACCCTCCTTCCCAGCAAAGTCTATTGGTCTGGGGCTCTTGATGGATAGTTTCAGGATTGGTAAACATACATACTTTATAAACTGAAGAATATTGCCATACAAAAAGAAAGGTGCAGTCAGCCCTCAATATCCATTGGATCCCTATCTGTGGAGTCAACCAATGGAGGATGGAAAATATTTTTTAAATTACATTTGTACTGAACATGTACAGACTTTTTTCTTATTTCTTTTCTTTATCTTTCTTTTTTTTTTTTTTGAAATGGAGTTTCCCTCTTTCGCCTAGGCTGGAGTGAAGTGGAGCAATCTCAGCTCACTGCAACCTCCGCCCCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTATAGGTGCCCACCACCACACCCGACTAATTTTTGTATTTTTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGGTCGTCCCGAGCTCCAGGCCTCAGGTGATCCACCCGCTTCGGCCTCCCAACGTGCTAGGATTACAGGCATGAGCCACTGCGCCCGGCCCTATCATTATTTCTTAAACAATACAGTGTAACAGTTATTTACAGAGTATTATAAGTAGTCTAGAGATTACATATTACAAGTTTTTAGGTATTATAAGTAATCTAGAGATGATTTAAAGTGTACGGAGGATGTACATGGTTATATGCAAATAGTATGCAAATTTTATATAAGGGATTCGAACGTCTGTGGATCTTGCTATCCAAGGGAGGACCTGGAACCCAATGGATATTGAAGGATGACTGTGCTTCTTATCTTCTTTTATGGACAAGGGTGGAGAATGCTTATAAAAGTATTTGGTTATACTTAAATTTTAATTTATCAGTTTAAATTATAAACATATGTTATATCTAAGAATGTGTTAATATAGAAAGAACTGTATTGTATCACAATGTTCTTCCATCCACTTAGCTATTCTATCACCAGTGTGCCTACTTCATGCCAGGCCTTGTGCCACATACTGGGAATACAGTAATAAGCAAGATAAATGCGGTTCCTACTCTCACTGAGATTATAGGCTGCTGGGGAGACAGCTGAGAGGGTTTGGACTTTATTCCAAAGATAATGGAATCCTCTGAAAGGTGTTAAGTAGGAGAATGGTGTGATGAGATTTGATTTTTGGAAAGCTAGCCCTGGCTGTTATGTTAGAGAATAGACTGCAGTAGAACAAAATTGGAAGCATAAAGGCCAGAGAGTATTCCTGTAACCCAGTGATTATGGTGACTTGGGCTTGGCTGGTGGCAGTTAGGATTGACAGAAATGGGACGTTTTGAAAGATACATAAGAAGACGAAGTCAGAAAGCTGTTTGGTTTATTGAATGTGTGGGCGAGGGATGGAGAAGCCTGAAGGTGACTCCGTGGTTTCTGCTATCTTGGTTAGGTGTGGTGATACCGTTTTGTGATCGTGGGACTGGAGTGTGGGGAAATGCACAGTGAAGATGATCAGTAGATTTATACATATGGATTTAAGGAGCCAGGAAAACATCCAGAGAAAGAAATCTATTAGGCAGTTGAGTATATAAATCTGTAGACAGGAGAGATGTGTGTACTGAGATAGAAATTTTGAAGTCATCAGAGTATAATAATACAATGGAAACCGTGTAAATAGGTGAATTCTCTAGAGAGATATGAACTCTCTAGATGTAAAGTAGAAGACAATGCCTGGAATTTGGGTTATGTAAACATAACAACAATATAGCAGGAGTAAGAACCTGGACTCCAGAGTCAGTGCTGGGATCCACTACTTACCAGCTGTGTAACCTCTATGGGTATCTTACTTCCAAGCCTCTGCGTCTTCCTCTGCAATGTGGCAAATGACTTGTTGGGTTACTGGGGAAACTGAATTAGTACATGTGGAAAGAATGTAGAACAGCATCTGACACTGAGCAAACACTCAAAAAATATTATTTTTATATTCTAAGTGGAAAATAAATGATTACTAACATTATCATTACTAATTATACGTTTTTAATAAGATGTGATACATCTCTAATATAGCAGTTTTTCCAGGCATACAATTAATTTTTGACACAAAAAAGCTTTTAAAAATCATGTCATAAAAGCTGAGAACCTTGGACATGTTCTGATTTATGTTACTGCTATAAGAATTTTTAAAACTGGTTTTTTAATGTGGGAAATTAGGTTTTATTAAGCTAAAAACGTTCCTACCTAGAGGACTTAAAAATTCATCTTGAAAAATATTATGAAGTTTGCCACACAAAGACAGTAGCTGAAGTTTTTGTTCTATATGTGTCATAACCTCTAATACAATATGTGATGTATTAGATCACTTTGCTAGCTGAATAAAACATCAAAAACAGAACCTCTTTCTCACCTTCCAGTCATTTCTTATTTTGCAGGTAAAGTAGCTCTACATCCTTGATTATTTTGCTTTAATTTCTATCCATTTACATGTGATGCTACATGTTACTCATTTTTAAAAATTAACCAAAAATAATTTTTGTGGTAATGTCTTAAAGTTGTCATAATGAATAAAAACAAACTTATAAAATGTTGAAATACTGCATGCTGCTGTTGACCATCGTCACCTCATCAGCATCCTGTATCCTTTTGTGTTTTGCATTGTTGTTCCTTTTGCATGGAAG
Seq C2 exon
ATCATCTGCTCTGGATTACCATGAGTTGAATGAGGATGGAGAGCTGTGGCTGGTTTATGAAGGGTTAAAACAAGCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535:ENST00000399231:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=NA C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development