BtaINT0098263 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57351944-57353261:+
Coord C1 exon
chr15:57351944-57352086
Coord A exon
chr15:57352087-57353050
Coord C2 exon
chr15:57353051-57353261
Length
964 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
CCCCTGCTCCCTCCCTGCAGCTT
3' ss Score
12.79
Exon sequences
Seq C1 exon
GGCATCTATGGGCGGCTCTTCGTGTGGATCGTGGACAAGATCAATGCAGCCATTTATAAGCCCCCTTCCCAGGAAGTGAAGAACTCTCGCCGGTCCATTGGTCTCCTGGACATTTTTGGGTTCGAGAACTTTGCAGTGAACAG
Seq A exon
GTACCATGTGGGGCTGTGTCTTGTGGGAATTTTGTTCTAAAGTATGGACTTACAGATCACATCTCTGCCTTTAAGCTACATTTAGCTGGTCCCAAGCACACTCTTCCAGGCGGTTGAAAAATGTGACTCCAGACATCCTGGGGGCCCTTCCCCTTCCTCCCCATCCCCTCCAGTCCCTGGGCCAGCTGAGGCCAGTGTGGTGGTGGGGCAGAGGCTCTTACCCCATTGTGACACTCTATTCCCCACTGCCCATTGCTCCATTTCCAAGCTGCAAGATGCCTCAAAGCAAGTGAGGCTGAGACTGAGCAATGTTTGAGATGGGGGTCTTGGCCATGCTTGATGTCCCACCCCTCTTGGGGGCCATGTGAGGTGCAGATGGATGGAGCAGGCCCAGGAGAATGCTGGGGCTAGAGGCAGCTGGCCTTGCCCCACTTTTTAGCTATGTTACCCCTGGTAAGTCAATTTAATTCTATAATGATCAGGTGTCTCAAAGCCCTCCCCCTACCCAGAACACAAGAAGTGTCAGTCACCTGGGAGAATGCTGAGTTGGTGGCTCAGAGATGTCACCCTCAAGGCCCTGCTTGCCAGATCTTATGAGCCCCCTTCCCATATCTGCTGATGCTTTGAATCTTTGAGGCCCACCTTCCCAGTGCCTTGGCTCTTCCTCTCCTGAGTGCTCTACCAGGGGTATGATGCCCACACCTCTCCCAGGGCCTGGTCATCCATCCTTAACTCTCCTCTGTCTCACTCAGTGACCTTGGGTGAGTGCTGTGTCCTCGCTGGGCCTCCATGCCCTCTTCTGTCATGGAGGAGGTTGGACTCACAATATGTTTCCACCTTGGAGACTGAAAATCCCAGGGGCACACTGAACACCAGGTTGGGGTCACCCCTGAGTGGCAAGGCAGGGCCTGAACACCCCTCCCCCTCGCCTGCTGCCACCCTGTCCCCTGCTCCCTCCCTGCAG
Seq C2 exon
CTTTGAGCAGCTCTGCATCAACTTTGCCAATGAGCACCTGCAGCAGTTCTTCGTGCGGCACGTGTTCAAGCTGGAGCAGGAGGAGTATGACCTGGAGAGCATTGACTGGCTGCACATTGAGTTCACAGACAACCAGGATGCCCTGGACATGATCGCCAACAAACCCATGAACATCATCTCCCTCATCGATGAGGAGAGCAAGTTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTATGGGCGGCTCTTC
R:
TTGGGGAACTTGCTCTCCTCA
Band lengths:
352-1316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development