GgaINT0104516 @ galGal3
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198146083-198146879:-
Coord C1 exon
chr1:198146737-198146879
Coord A exon
chr1:198146294-198146736
Coord C2 exon
chr1:198146083-198146293
Length
443 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
CCTTCACTTTCTGCCCACAGTTT
3' ss Score
10.42
Exon sequences
Seq C1 exon
GGAATTTATGGGCGGCTCTTTGTTTGGATCGTGGAGAAGATCAATGCTGCAATTTACAGGCCTCCTTCACAGGAACTCAAAAGTGTTAGAAGATCCATTGGCCTCCTTGACATCTTTGGCTTTGAGAACTTCACTGTGAACAG
Seq A exon
GTATAGAGCCTGCAGAAGGAGAACCAGGTCTTAACCCTCATTCACCAACCCAAACTTAACGTCTTGCAGTTCTTACATCTCCCTTGGGATGAACAGGATTTTGTTCGTCCAGGCCTATTTCTGCATGAGAGACTACCAGAATTAGTCACTTATATGTTGCATCAGACAAGATACTTCCATTATTTGTTTAATTATTGTCCAGAATGTATCCCTAGGAGATGACCTCCAACTAATTCATTTAGGCTACATACATATAACAGTGGTGACATTGTTTTGGGTGAGAAAAACAGATTAGCTGGACCAATGTGGTCATTTTTAGCCAGTACCAACCTTAGCAGGTGATTTACAAGACCTGAAGATATTGCTTCAAGCGTAGGAGCATGACAGAGAAATAAAGACTATGGTGGATCTAAACTAACCTTTCCTTCACTTTCTGCCCACAG
Seq C2 exon
TTTTGAGCAGCTGTGCATCAACTTTGCAAATGAGAACTTGCAGCAGTTCTTTGTGCGACACGTTTTTAAGCTGGAGCAGGAGGAGTACAACCTGGAGAACATCAACTGGCAGCACATCGAATTCACCGATAACCAGGATGCCTTGGACATGATTGCCATCAAACCCATGAACATCATCTCTCTCATTGATGAGGAGAGCAAGTTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGGCGGCTCTTTGTTTGG
R:
TTGGGGAACTTGCTCTCCTCA
Band lengths:
347-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]