BtaINT0098279 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57379136-57382203:+
Coord C1 exon
chr15:57379136-57379263
Coord A exon
chr15:57379264-57382076
Coord C2 exon
chr15:57382077-57382203
Length
2813 bp
Sequences
Splice sites
5' ss Seq
CCGGTCAGC
5' ss Score
4.61
3' ss Seq
TTGTACCCCATTCTGCTTAGGGA
3' ss Score
6.44
Exon sequences
Seq C1 exon
GTGACCAAGAGGCTGCATGATGGGGAGTCCACGGTGCAGGGCAACAGCATGCTGGAGGACCGGCCCACCTCCAACCTGGAGAAGCTGCACTTCATCATTGGCAACGGCATCCTGCGGCCAGCACTCCG
Seq A exon
GTCAGCACCTGAGGGCTGGGGCTCAGGGAGGGGGCAGCTGGCAGGGGGAGCCATCCTGCTCTTCCAGCCCCACAAGGCTTTGGGTGGCAGAATCGTGGCTCCATCACTTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCGACTCTTTGTGACCTCATGAACCACAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTCCACCCAAACCCATGTCCATTGTGTTGGTGATGCCATCCAACCATCTCATCCTCTGTCGTCCCCTTCTTCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTTCAAATGAGTCAGCTCTCTGCATCAGGTGACCAAAGTATTGGAGTTTCAGCTTCAACATCAGTCCCTCCAATGAACAGCCAGGACTAATCTCCTTTAGGATGGACTGGCTGGATCTCCTTGCAGTCCAATTTAGTAACTGATTAAGCCAAGCAGGCCTGGGTTTAGCTCTGCTGGTAGCTGGTTGTGTGGTCTTGGTAGAGTGATTTTATCTTTGCAAGGTTCAGTTTCCTCCTCTGCTAAGACGGAATAATAATAGTACCTACCTTGTAGGCTTGGGGCAGATAAAACTATGGAAAGTGTGACCTAGGACCTCCATAGTGGCCACTCAGTAGACGGTAGCTGTTGGCTATTAGCATTATCTGATGTATAACCCATCCCTGCGGGCACCTTCGGTGCACCCCGCCCAGGCCTGTGCTCAGGGTTACTGTGGTCAGAAGGCATCCAGCACATGCCTCAGGCCCAGGAGAGGCCTTTGCTTGGGTCCCTGGGGTGTTGTGGAGGCGCTGGGATGGTCTGTGACTTTTCAGGAGCAATTAAGGAATCAACTCAGCTGCATCAGTGGCGGGAAAACACGGTTTCTCTGAGAACTCCATCTGCACAAGGTGTCTGGTTAGGAGAGCAGACCATGAACTCATGTGTGTTGGCTGGGAGAACAGCAGGATGGGGTGGGTGGGGAGGTCAAGTATCATTTTACCAGTAGGAGGCAGGAAGTCCAGAGAAGGGAAGAGGTTTGCCCAGGGGTCACTGGCCTCTCTTTCATGGCTCCTTGAGGCCAGTTACTACCTTGCTCACCAGAGATGTAGCACTTGGGGCTGTCAGCCCCTGGGAAGAAAAGGTAATTGCCCAAGGTATGTTTAAGGGTTAAGAATTTACCTCATAGGGAGGAGGGAGGGGGGTTCAGGATGGGGAACACATGCGTGCCTGTGGCGGATTCTTTTTGATATTTGGCAAAACTAATACAATTATGTAAAGTTTAAAAATAAAATTAAATTAAAAAAAAAACCCAATAAATGACAACCACAAAGAAAAAAAAAAAATTTACCTCATAATTAATCTCATCATCAGACCTTAAGTGATGCTTCTAAATAACACAGTGCCAGGGTCCCTGGACTGAGTCAGAAGCCTGGGTGCTGACTCCCTGAGGGTCCACGACTAATCCCTCCCTTCTCTCGACCTCCATATCCCTGCTTAGAAAGTGAACAGGGTCAGGGCTTCCAGCTACTGGTCTGTGACAAGATGGGGGAAATAAGGATGTTTCTAAGTTTGATATATTTAAAACATGGTTCTTTGTTCTGAGATTTTGCCCTTCCTACTTTTTGGATATTAAAATTACCTTTGTTTTATAAAATGATTGTGATATAGATAGTGGGCAGGGGCTGTGTGTTTGGTGTGTTTTAAATGTCCTTATTTGTCATTATAAGTTGATGACAATTAAGTTATAAGCTATTCAACTTAGTAAGTTAGCAACTTCCAGAATTTATTTTGAAGTTGTATTGGTCTGTGAACTCTCAAAATTGGGGAGCCACTGAATTAGAAACCTGCCTTTCTAAGAGAGAAGAACAGCAGTGAGTGCCCCCTGGTGGTTACTGCACCATGGTAGGTCCAGCCTTTGTCCCTGAATGGACAGGTAGCATCTTAAGGCTGCAGCTAGGCTGGCATCTTTGGGGGTTTACTGTGCTGGGCATCGTGCCAGGGCCTGTATAAGCCTTGGCTCATTTTTCTTCACAACAATCTTATAAGCAGGATGCTATCACTTCCCTTTAAAATGAAAACAACACAAAACAAAAGTAATACGTGCATGCTCACTCGCTCAGTCGTGTCTGACTCTTTGTGACCCCCATGGACTGCCAGTCCGCCAGGCTCCTCTGCCCATGGAATTTTCCAGGCAAGAGTACTGGAGTGGGTTGCCATTTCCTCCTTCAGGGGATCTTCCTGACCCAGGGATCAAAAGTAATACATGTCCACTTAAATATTCAAACATACGGAAACATCAAGAGAGCATCAAAGTCCCTACTCATTTCCTCCCCCAGAGAAACTCCCCAGATGTTTTTCCCATTTCCTGCTCTGCTGGTTTCCATTAGTGGAAGTTGTACCTGCTGCTGGGACTGTGGGTCAGGCTTGGAGGTGAACTCACCTGCCCAGGCCACGCAGCTTGGTGAGGGGTGAGGGGGGGATGGAGCCTGTGCTTCCCATTAGAGTGGTCACTACTGACCATGGCCCCGTGCCCAGAGCAGGGTGTGCACCACCCTGTGGATTGGGGGCCCTGGACTCTGGATTGGAGTCAGGTATGAACGTGCTTCACGTCTGATGAGCCTGTCTCCTCCAAAGCCAGACCCTCCCCAGAGCCCTGGGCTCAGCCTTCCCCACCTGGTCCCACTCTGACCACTCTCCTCCTGGGTCATCCCTGGCAAGTGGGGGAGTAGGCATCTCACCTGCTGCTGGGATGGAGGGTGGGCTTTCCCTCTGAGACAGTCTGTCTCCCTTCCTTGTACCCCATTCTGCTTAG
Seq C2 exon
GGATGAGATCTACTGCCAGATCAGCAAGCAGCTCACTCACAACCCCTCCAAGAGCAGCTATGCCCGGGGCTGGATCCTCGTGTCTCTCTGCGTGGGCTGCTTTGCCCCCTCTGAGAAGTTTGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
NA
C2:
PF0078412=MyTH4=FE(39.6=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development