MmuINT0104559 @ mm10
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98073120-98075134:-
Coord C1 exon
chr7:98075007-98075134
Coord A exon
chr7:98073247-98075006
Coord C2 exon
chr7:98073120-98073246
Length
1760 bp
Sequences
Splice sites
5' ss Seq
GCGGTCAGT
5' ss Score
6.52
3' ss Seq
GAGGTATTGTCCCCACTTAGGGA
3' ss Score
5.61
Exon sequences
Seq C1 exon
GTGACCAAGAGGCTGAACGATGGGGAATCCACGGTACAGGGCAACAGCATGCTGGAGGATCGGCCCACCTCAAATCTAGAGAAGCTGCACTTCATCATCGGCAACGGCATCCTGCGGCCTGCGCTGCG
Seq A exon
GTCAGTACCCGAGGGGCAGTGGGATGCTGTGTCTGGGCTTCTCTAGGCAGAGGCTGGTGGTCTCCAGGCAGCTGCTAATGGCTCCACTTTAGCCACAGATTAAGCAAAAGGCCCGTGCTAGCTCTGTTGCTGGCTAGTCATATGACCCTAACCTATCTCCTTCATCCCTCTATGCCTTACCTGGAAATGTGGAATAAGAATAGCACCCACACCTGAGATCTGAGGGGAGGCAGAACTTTGAGACAGTGAATGGAGAGAGCAGACTGTAACCTGTAGCTAGTGGTTATCATGGCCCCACCTGAGCGGTCGGATTTAAACCCACTGCCGCTGGCTCATGTTCAGTGCAGCTGGCCCAGGCCAATGGCAAGGTTACTCTATGCCTAGAGAATCTATTATTTCCATCCTGGGTCAGGAAAGACCTCTACTAGTGGCGAGTTGGTGGGAAGACTAGAGTCACCTATACAATTAGATAGTTAACCCAGCCAGATGTGGGGACCTGAGCTTCTCAGGGAGCTGGCTTATATGACCATAGGTAAAGACTTGGGGTCCCAAGAACTTATGTTTATATTGGGAGTGTGGGACAAGAGACAAGTCCCATCTAATGGGGAAACTGAGGCCCAGCATGAGGAAGAGACTTTCCAGGAGTTATTTGGCCTTCTAGCCCACCTACCTGTCAGCCTCACCTCTCTCCACTGCTCCTCACTAGAGCGAGAGGCCACCCAGGGTCACCAGAAGGGAGAGGTGGCCACCAGGTTATCCATCTGCCACATCTGAAGTAGACTGTTCAGGAATCTTGTGCCAGGAACCCCACACTAAAAAAGGCTAGAAAGTAGACTCCTGAGGGACCACGGCTATCCTCCCTTCTCTGGCTTAGCTACTGGCCACCTTCTATTGGTTGAGTGGGGCCAGGATGGAGACTCCGGCACAGGTTCCCATTGGTCTGAGACAAAATGGGACCTCGATGAGCCATGGCAGTTTCACTTGCAGGCCCGATTGCTGCTGTGATGGTGGCCTGTCTGCTTTGGATATTTCAAGTGGAAATGACCTGGGTCATGGGCAAGAGGTCTAAACGCACATGTGTTATCTTCTTGTGATAAAAAGATGGCAACTTGAAATTTTGCCGGTTCATGAACTCTCCAGATTGAGAAGTTACTGAATGAGACAGTCCTGCCTCTTACCTGGGACTGTCCTCATAGAGGAGGAGCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTCCTGGGTGGGTAAGCCCTCTTGGACCTCCCACAGAGGAAAATGCTGTTAAGAGAAGATGTTTTCATCTTAGTGCAAAGTGACCCATGTACTGAGCATTCACAAGCTGGAGAACTGTGTTTCAGAGTAAGGGTCCCTGCTCACTGGCCCTGACACCCTCCCAGGTGCCTGCTCTGTTTCTGCCATGTCAGCCACTATTACAGAAACTGTCCCTGACTGTGGGGGTCCCTTGCTTGGGCTATATGGTTGACCTGGAGCTAGGCAGGGTGGACATCAGGGGCTGTGACCTTTGAACTTGCATTAGGATATAGGTCACTTTGTGGATGGTGGACCTCACCTGACCCATGCCTTATTCCTGGTGACCCCCAAATCTAAAGCAAGACCCTCTGCTCAGCCTCTTTATCCAGTCTGTCTCTGTCTCCTGGGAAGCCTTAGGCTGGCTGGTCAGAAGAGCTGTGGTGTGGAAGGGTGGCTGGGTGTCACTCTGAGGTATTGTCCCCACTTAG
Seq C2 exon
GGACGAGATTTACTGCCAGATCAGTAAGCAGCTCACACACAACCCATCCAAGAGCAGCTATGCCAGGGGCTGGATCCTCGTGTCGCTCTGTGTGGGCTGCTTCGCCCCCTCTGAGAAGTTCGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761:ENSMUST00000107128:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
NA
C2:
PF0078412=MyTH4=FE(39.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCAAGAGGCTGAACGAT
R:
TTAACGAACTTCTCAGAGGGGG
Band lengths:
254-2014
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types