GgaINT0104531 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192374487-192375951:-
Coord C1 exon
chr1:192375824-192375951
Coord A exon
chr1:192374614-192375823
Coord C2 exon
chr1:192374487-192374613
Length
1210 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
TGTTTTCACTTCTATTGCAGGGA
3' ss Score
9.79
Exon sequences
Seq C1 exon
GTAACAAAGAGACTTCATGACGGGGAGTCAACACTCCAAGGTAATAGCATGCTTGAAGACCGGCCCACCTCCAACCTGGAGAAGCTCCATTTCATTATTGGTAATGGCATCCTCAGGCCAGCATTAAG
Seq A exon
GTTAGAAATCAGGACAAAGGCATAAACGTGCTGTTCTTTTAATTCCTTCTTCACTGAGCTATTCTTGTCTAAATGATCTTGCTGATGTGTGCAGCTTTATCATGCCCTCGTCCTTCTGGTTGTATTGCACAATTGGGCTGGGTTGGGTCATGTTCCCTAGTGTTTATTTCAGGCCTGATCAAAAGACCATGCAGAGGGATTCAAAGGCTTCTGAAAGAGCTGGTGGGTGCTGGATTACTTTATCAGCGCTCATGCTTGCTGTTCACTACGCTTTGCTTTCCATTTGACTATTTAGGCCTCTGTCCTTTGTGTGAATATTTTTGATGGCACAGAAGTGAAAAACTCAAACTCATTTCTGTTACTAAGCATTCAAAAAACAGAAACAATCAAATTAGAGATGACTGTGTATCTTTGTTTTAACCCATTTATATGTGTGTGTGATATAATGCAATCCATTTCATTTTGTCCTCCCATTTCACCAGGAAACCCTTATGTTTCTGTACATCTACTCAGATCTAATAGCATACTCATGAGCTTTTCCATGGGTTTTTTCAGTGTAACAGGTTGGTTAACTAGTTCTTACTGCTTCGCATGTAGATAAAGAAGTACCAATATCCCTCATTTTGCATGTGGAGAATTAAAGTCAAAGGCAGAATTAGATATTAATTCTCCAAATGAGTTATCCATCAGTGCATCACACATGGGTCTATTTATACATGAGATGGACAAACCTAGATCTCTGCTGGAGCAGATAGTTCCCAGCATTTCTAGAATTCATGTTTAGGTGCCCCAAAAGTAACAGTCAGCAAATAAGGACTCCCAGTAGATGGCCCTGTTGGTTTAGGAGGCTCACTTGGTATCGGGGGGAAACCTTCGTAAGACTCCATCTCCGTAAGATTCCATTTTCCAGAAGAGACATTCAGAGACCTGAAGCTTGAGACTCACTTCTATTCCTCTTTTCTGTGTCAATCAGCAATGGATAATTTCTGCTGAAGCACAGGGAAAACTCAATTGAGAACTGGAGAAGGAAAGTGTTTGATAAACCATGCAGTGACCAGAGTGACCATCATTAGGACTATTATATGCATGTCCTTGCAATTCCAAAATGAACCTTTAAGTATCACATGCAGACGGGGTTTCCCTCTTTCTCTATTAACACTGAGAAACACCACCTTGTTAATTCTAATTTCTGTTTTCACTTCTATTGCAG
Seq C2 exon
GGATGAAATCTATTGTCAAATCTGTAAGCAGCTGACTCAGAACCCATCCAAAAGCAGTCACGCCAGGGGCTGGATCCTGATGTCCCTCTGCGTGGGGTGTTTTGCTCCTTCTGAGAAGTTTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
NA
C2:
PF0078412=MyTH4=FE(39.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACAAAGAGACTTCATGACGGGG
R:
CTTTACAAACTTCTCAGAAGGAGCA
Band lengths:
254-1464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]